RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 ADAMTS9Q9P2N4 1935 aa13.02□□□□□ -0.33
CUX1-211ENST00000546411 IGHV3OR16-8A0A075B7F1 116 aa13.02□□□□□ -0.33
CUX1-211ENST00000546411 S100A7P31151 101 aa13.02□□□□□ -0.33
CUX1-211ENST00000546411 WDR73Q6P4I2 378 aa13.02□□□□□ -0.33
CUX1-211ENST00000546411 RNF2Q99496 336 aa13.02□□□□□ -0.33
CUX1-211ENST00000546411 FBXL15Q9H469 300 aa13.02□□□□□ -0.33
CUX1-211ENST00000546411 ZNF430Q9H8G1 570 aaPredicted RBP13.02□□□□□ -0.33
CUX1-211ENST00000546411 THYN1Q9P016 225 aa13.02□□□□□ -0.33
CUX1-211ENST00000546411 CHD9Q3L8U1 2897 aa13.02□□□□□ -0.33
CUX1-211ENST00000546411 SAA1P0DJI8 122 aaPredicted RBP13.01□□□□□ -0.33
CUX1-211ENST00000546411 MMD2Q8IY49 270 aa13.01□□□□□ -0.33
CUX1-211ENST00000546411 CDH23Q9H251 3354 aa13.01□□□□□ -0.33
CUX1-211ENST00000546411 YPEL1O60688 119 aa13.01□□□□□ -0.33
CUX1-211ENST00000546411 PAX6P26367 422 aa13.01□□□□□ -0.33
CUX1-211ENST00000546411 YPEL2Q96QA6 119 aa13.01□□□□□ -0.33
CUX1-211ENST00000546411 OR51M1Q9H341 326 aa13.01□□□□□ -0.33
CUX1-211ENST00000546411 WDR31Q8NA23 367 aa13.01□□□□□ -0.33
CUX1-211ENST00000546411 PRSS3P2Q8NHM4 247 aa13.01□□□□□ -0.33
CUX1-211ENST00000546411 RNF138Q8WVD3 245 aa13.01□□□□□ -0.33
CUX1-211ENST00000546411 MRPL18Q9H0U6 180 aaKnown RBP13.01□□□□□ -0.33
CUX1-211ENST00000546411 LINC00587B1AMM8 73 aa13□□□□□ -0.33
CUX1-211ENST00000546411 M0R2Z0 102 aa13□□□□□ -0.33
CUX1-211ENST00000546411 GPR6P46095 362 aaPredicted RBP13□□□□□ -0.33
CUX1-211ENST00000546411 ZNF596Q8TC21 504 aa13□□□□□ -0.33
CUX1-211ENST00000546411 MED12LQ86YW9 2145 aa13□□□□□ -0.33
CUX1-211ENST00000546411 HIST1H2BKO60814 126 aa13□□□□□ -0.33
CUX1-211ENST00000546411 HIST1H2BJP06899 126 aa13□□□□□ -0.33
CUX1-211ENST00000546411 HIST1H2BOP23527 126 aa13□□□□□ -0.33
CUX1-211ENST00000546411 HIST1H2BBP33778 126 aa13□□□□□ -0.33
CUX1-211ENST00000546411 HIST1H2BDP58876 126 aa13□□□□□ -0.33
CUX1-211ENST00000546411 HIST1H2BCP62807 126 aa13□□□□□ -0.33
CUX1-211ENST00000546411 HIST2H2BEQ16778 126 aa13□□□□□ -0.33
CUX1-211ENST00000546411 HIST2H2BFQ5QNW6 126 aaPredicted RBP13□□□□□ -0.33
CUX1-211ENST00000546411 ZNF474Q6S9Z5 364 aaPredicted RBP13□□□□□ -0.33
CUX1-211ENST00000546411 FA2HQ7L5A8 372 aa13□□□□□ -0.33
CUX1-211ENST00000546411 TCF23Q7RTU1 214 aa13□□□□□ -0.33
CUX1-211ENST00000546411 HIST1H2BHQ93079 126 aa13□□□□□ -0.33
CUX1-211ENST00000546411 HIST1H2BNQ99877 126 aa13□□□□□ -0.33
CUX1-211ENST00000546411 HIST1H2BMQ99879 126 aa13□□□□□ -0.33
CUX1-211ENST00000546411 DERL1Q9BUN8 251 aa13□□□□□ -0.33
CUX1-211ENST00000546411 SLC25A15Q9Y619 301 aa13□□□□□ -0.33
CUX1-211ENST00000546411 IGKV1D-17A0A075B6S4 117 aa13□□□□□ -0.33
CUX1-211ENST00000546411 HNRNPA3P51991 378 aaKnown RBP13□□□□□ -0.33
CUX1-211ENST00000546411 SNRNP40Q96DI7 357 aaKnown RBP13□□□□□ -0.33
CUX1-211ENST00000546411 DCAF16Q9NXF7 216 aa13□□□□□ -0.33
CUX1-211ENST00000546411 PTPN13Q12923 2485 aa12.99□□□□□ -0.33
CUX1-211ENST00000546411 FGF23Q9GZV9 251 aaPredicted RBP12.99□□□□□ -0.33
CUX1-211ENST00000546411 CCKARP32238 428 aa12.99□□□□□ -0.33
CUX1-211ENST00000546411 SRP14P37108 136 aaKnown RBP12.99□□□□□ -0.33
CUX1-211ENST00000546411 TCTAP57738 103 aa12.99□□□□□ -0.33
CUX1-211ENST00000546411 HIGD1AQ9Y241 93 aa12.99□□□□□ -0.33
CUX1-211ENST00000546411 IGHV3OR16-13A0A075B7E8 117 aa12.99□□□□□ -0.33
CUX1-211ENST00000546411 IGHV3-74A0A0B4J1X5 117 aa12.99□□□□□ -0.33
CUX1-211ENST00000546411 APCSP02743 223 aa12.99□□□□□ -0.33
CUX1-211ENST00000546411 TMEM183BQ1AE95 376 aa12.99□□□□□ -0.33
CUX1-211ENST00000546411 LURAP1LQ8IV03 231 aa12.99□□□□□ -0.33
CUX1-211ENST00000546411 GSN-AS1Q9NRJ2 163 aa12.99□□□□□ -0.33
CUX1-211ENST00000546411 HEPN1Q6WQI6 88 aa12.99□□□□□ -0.33
CUX1-211ENST00000546411 Q6ZR03 302 aa12.99□□□□□ -0.33
CUX1-211ENST00000546411 TUBA4BQ9H853 241 aa12.99□□□□□ -0.33
CUX1-211ENST00000546411 IGKV1-39P01597 117 aa12.98□□□□□ -0.33
CUX1-211ENST00000546411 IGKV1D-39P04432 117 aa12.98□□□□□ -0.33
CUX1-211ENST00000546411 SPSB3Q6PJ21 355 aa12.98□□□□□ -0.33
CUX1-211ENST00000546411 NAGKQ9UJ70 344 aa12.98□□□□□ -0.33
CUX1-211ENST00000546411 SELENOTP62341 195 aa12.98□□□□□ -0.33
CUX1-211ENST00000546411 TMEM186Q96B77 213 aa12.98□□□□□ -0.33
CUX1-211ENST00000546411 IFI27L2Q9H2X8 130 aa12.98□□□□□ -0.33
CUX1-211ENST00000546411 WDR83OSQ9Y284 106 aa12.98□□□□□ -0.33
CUX1-211ENST00000546411 HIST1H1EP10412 219 aaKnown RBP12.98□□□□□ -0.33
CUX1-211ENST00000546411 PAX9P55771 341 aa12.98□□□□□ -0.33
CUX1-211ENST00000546411 LINC00305Q7Z4B0 112 aa12.98□□□□□ -0.33
CUX1-211ENST00000546411 WISP2O76076 250 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 FCGR2BP31994 310 aaPredicted RBP12.97□□□□□ -0.33
CUX1-211ENST00000546411 SRSF7Q16629 238 aaKnown RBP eCLIP12.97□□□□□ -0.331e-8■■■■■ 28.4
CUX1-211ENST00000546411 SPATA31B1PQ5VZV4 182 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 TREML4Q6UXN2 200 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 STXBP6Q8NFX7 210 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.97□□□□□ -0.33
CUX1-211ENST00000546411 IGKV3-15P01624 115 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 S100A4P26447 101 aaKnown RBP12.97□□□□□ -0.33
CUX1-211ENST00000546411 SRIP30626 198 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 PKIAP61925 76 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 IL15RAQ13261 267 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 PRR31Q5SQ13 230 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 LEMD1Q68G75 181 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 KIR3DL3Q8N743 410 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 IGHV3OR16-10A0A075B7F0 116 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 FOXI3A8MTJ6 420 aaPredicted RBP12.97□□□□□ -0.33
CUX1-211ENST00000546411 F2RL2O00254 374 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 ORM1P02763 201 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 CD81P60033 236 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 MLANAQ16655 118 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 TMEM14EPQ6UXP3 125 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 TXNDC17Q9BRA2 123 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 PTPRSQ13332 1948 aa12.97□□□□□ -0.33
CUX1-211ENST00000546411 C15orf61A6NNL5 157 aa12.96□□□□□ -0.33
CUX1-211ENST00000546411 WT1P19544 449 aaPredicted RBP12.96□□□□□ -0.33
CUX1-211ENST00000546411 LGALS7P47929 136 aa12.96□□□□□ -0.33
CUX1-211ENST00000546411 DUX4L9Q6RFH8 374 aaPredicted RBP12.96□□□□□ -0.33
CUX1-211ENST00000546411 C11orf42Q8N5U0 333 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms