RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 COMMD3Q9UBI1 195 aa5.29□□□□□ -1.56
SDCBP-208ENST00000520228 RBM7Q9Y580 266 aaKnown RBP5.29□□□□□ -1.56
SDCBP-208ENST00000520228 PKD1L1Q8TDX9 2849 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 SMIM31A0A1B0GVY4 71 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 OR5H14A6NHG9 310 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 H0YJW9 148 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 H7C2Y5 167 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 M0R1X1 148 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 CD28P10747 220 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 CBX5P45973 191 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 RPL5P46777 297 aaKnown RBP5.28□□□□□ -1.56
SDCBP-208ENST00000520228 ARPC4P59998 168 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 ACTBP60709 375 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 MMDQ15546 238 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 TMEM69Q5SWH9 247 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 CNIH2Q6PI25 160 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 FAM131AQ6UXB0 335 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 SIGLEC15Q6ZMC9 328 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 SLC35E3Q7Z769 313 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 CLVS1Q8IUQ0 354 aaPredicted RBP5.28□□□□□ -1.56
SDCBP-208ENST00000520228 H1FOOQ8IZA3 346 aaPredicted RBP5.28□□□□□ -1.56
SDCBP-208ENST00000520228 Q8N9W7 124 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 DRAXINQ8NBI3 349 aaPredicted RBP5.28□□□□□ -1.56
SDCBP-208ENST00000520228 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.28□□□□□ -1.56
SDCBP-208ENST00000520228 OR5AU1Q8NGC0 362 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 AP3S1Q92572 193 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 C11orf52Q96A22 123 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 OR2D2Q9H210 308 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 KLK11Q9UBX7 282 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 ANXA10Q9UJ72 324 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 WASHC3Q9Y3C0 194 aa5.28□□□□□ -1.56
SDCBP-208ENST00000520228 KIAA2026Q5HYC2 2103 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 A0A087X0K7 114 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 SRRM4A7MD48 611 aaKnown RBP5.27□□□□□ -1.57
SDCBP-208ENST00000520228 J3QRK9 145 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 NBR2O15453 112 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 RBBP9O75884 186 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 IGHG2P01859 326 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 APOA1P02647 267 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 APOA2P02652 100 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 FCER2P06734 321 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 PTHLHP12272 177 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 NFYAP23511 347 aaPredicted RBP5.27□□□□□ -1.57
SDCBP-208ENST00000520228 PRSS3P35030 304 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 SOX6P35712 828 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 TAS2R20P59543 309 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 FAM71E2Q8N5Q1 922 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 GVQW1Q8N7I0 195 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 BEST4Q8NFU0 473 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 NPBQ8NG41 125 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 OR4X2Q8NGF9 303 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 RAB2BQ8WUD1 216 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 CHPT1Q8WUD6 406 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 NOL4LQ96MY1 436 aaPredicted RBP5.27□□□□□ -1.57
SDCBP-208ENST00000520228 RNF5Q99942 180 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 IFT46Q9NQC8 304 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 SDHAF2Q9NX18 166 aa5.27□□□□□ -1.57
SDCBP-208ENST00000520228 MRPS7Q9Y2R9 242 aaKnown RBP5.27□□□□□ -1.57
SDCBP-208ENST00000520228 VWFP04275 2813 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 TCRBV4S1A1TA0A5B7 111 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 PSMB11A5LHX3 300 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 MEIS3P1A6NDR6 274 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 FAM25AB3EWG3 89 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 FAM25CB3EWG5 89 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 FAM25GB3EWG6 89 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 TNFSF12O43508 249 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 HPGDSO60760 199 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 NOL3O60936 208 aaKnown RBP5.26□□□□□ -1.57
SDCBP-208ENST00000520228 CLN5O75503 358 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 SLC22A5O76082 557 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 HLA-DQB1P01920 261 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 OPN1MWP04001 364 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 IGKV1-16P04430 117 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 EIF4EP06730 217 aaKnown RBP5.26□□□□□ -1.57
SDCBP-208ENST00000520228 OPN1MW2P0DN77 364 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 OPN1MW3P0DN78 364 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 OR5H8P0DN80 308 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 ELK1P19419 428 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 CNTFRP26992 372 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 FCGR2CP31995 323 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 TMBIM6P55061 237 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 ERVK-16P61578 105 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 SLC35B1P78383 322 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 CBX3Q13185 183 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 SPCS2Q15005 226 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 PLGLAQ15195 96 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 C5orf64Q2M2E5 130 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 NSUN5P1Q3KNT7 163 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 TCTEX1D4Q5JR98 221 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 ZNF343Q6P1L6 599 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 NDUFA11Q86Y39 141 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 PDPNQ86YL7 162 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 STPG2Q8N412 459 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 FLYWCH2Q96CP2 140 aaKnown RBP5.26□□□□□ -1.57
SDCBP-208ENST00000520228 ADTRPQ96IZ2 230 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 TSNAXQ99598 290 aaKnown RBP5.26□□□□□ -1.57
SDCBP-208ENST00000520228 BCL7BQ9BQE9 202 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 HSPB9Q9BQS6 159 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 GON7Q9BXV9 100 aa5.26□□□□□ -1.57
SDCBP-208ENST00000520228 SLC35D1Q9NTN3 355 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms