RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 ZNF355PQ9NSJ1 428 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 TMEM56-RWDD3S4R434 201 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 TRAV41A0A0B4J266 112 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 A0A0B4J2A0 478 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 DUXBA0A1W2PPF3 345 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 PSMB11A5LHX3 300 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 MSGN1A6NI15 193 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 AMY1AP04745 511 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 IL5P05113 134 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 CRYGBP07316 175 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 HOXB5P09067 269 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 TRAPPC2P0DI81 140 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 TRAPPC2BP0DI82 140 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 HLA-GP17693 338 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 RPL27AP46776 148 aaKnown RBP6.81□□□□□ -1.32
USP4-213ENST00000488520 PJVKQ0ZLH3 352 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 DHRS2Q13268 280 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 UNQ5815/PRO19632Q6UWF5 114 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 ZNF329Q86UD4 541 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 C12orf45Q8N5I9 185 aaPredicted RBP6.81□□□□□ -1.32
USP4-213ENST00000488520 OR1L8Q8NGR8 309 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 OR1S1Q8NH92 325 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 ZNF431Q8TF32 576 aaPredicted RBP6.81□□□□□ -1.32
USP4-213ENST00000488520 LSM10Q969L4 123 aaKnown RBP6.81□□□□□ -1.32
USP4-213ENST00000488520 SEC22AQ96IW7 307 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 DUX3Q96PT4 197 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 PRR25Q96S07 402 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 GPR61Q9BZJ8 451 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 ZNF430Q9H8G1 570 aaPredicted RBP6.81□□□□□ -1.32
USP4-213ENST00000488520 SHPKQ9UHJ6 478 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 TMED3Q9Y3Q3 217 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 OR51B2Q9Y5P1 312 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 WSB1Q9Y6I7 421 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 HUWE1Q7Z6Z7 4374 aaKnown RBP6.81□□□□□ -1.32
USP4-213ENST00000488520 DNAH7Q8WXX0 4024 aa6.81□□□□□ -1.32
USP4-213ENST00000488520 CSMD3Q7Z407 3707 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 EPPK1P58107 5090 aaKnown RBP6.8□□□□□ -1.32
USP4-213ENST00000488520 IGHV7-81A0A0B4J1V7 117 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 TEX50A0A1B0GTY4 177 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 C13orf42A0A1B0GVH6 325 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 A0A1W2PN81 502 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 C3orf84H3BNL1 204 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 SSNA1O43805 119 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 IGF1P05019 195 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 FGF2P09038 288 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 NHLRC4P0CG21 123 aaPredicted RBP6.8□□□□□ -1.32
USP4-213ENST00000488520 SULT1A3P0DMM9 295 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 SULT1A4P0DMN0 295 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 DEFA4P12838 97 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 CHRNA7P36544 502 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 HSPE1P61604 102 aaKnown RBP6.8□□□□□ -1.32
USP4-213ENST00000488520 SUPT4H1P63272 117 aaKnown RBP6.8□□□□□ -1.32
USP4-213ENST00000488520 ERHP84090 104 aaKnown RBP6.8□□□□□ -1.32
USP4-213ENST00000488520 ECSCRQ19T08 205 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 AKIRIN2Q53H80 203 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 TEX38Q6PEX7 206 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 LYZL2Q7Z4W2 148 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 STPG2Q8N412 459 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 COMMD1Q8N668 190 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 SLC35G3Q8N808 338 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 LFNGQ8NES3 379 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 SRSF12Q8WXF0 261 aaKnown RBP6.8□□□□□ -1.32
USP4-213ENST00000488520 GPR146Q96CH1 333 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 HSPB9Q9BQS6 159 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 MARVELD1Q9BSK0 173 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 LINC00527Q9UJ94 153 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 NSG2Q9Y328 171 aa6.8□□□□□ -1.32
USP4-213ENST00000488520 TRAV3A0A0B4J244 114 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 A0A1B0GU03 582 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 C5orf51A6NDU8 294 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 LINC01548A6NM66 108 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 SNRPGP15A8MWD9 76 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 FAM25EA8MYX2 175 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 ATP6V0E1O15342 81 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 IGKV1-39P01597 117 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 IGKV1D-39P04432 117 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 OR9G9P0C7N8 305 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 SNCAP37840 140 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 SUB1P53999 127 aaKnown RBP eCLIP6.79□□□□□ -1.32
USP4-213ENST00000488520 RPL23AP62750 156 aaKnown RBP6.79□□□□□ -1.32
USP4-213ENST00000488520 SMCO1Q147U7 214 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 ANKRD55Q3KP44 614 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 CXorf66Q5JRM2 361 aaPredicted RBP6.79□□□□□ -1.32
USP4-213ENST00000488520 TEPPQ6URK8 271 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 HSD17B13Q7Z5P4 300 aaPredicted RBP6.79□□□□□ -1.32
USP4-213ENST00000488520 LRTM2Q8N967 370 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 MINDY2Q8NBR6 621 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 KLHL30-AS1Q8NEE0 82 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 OR5T1Q8NG75 326 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 OR5M8Q8NGP6 311 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 OR5B3Q8NH48 314 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 MITD1Q8WV92 249 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 NOL4LQ96MY1 436 aaPredicted RBP6.79□□□□□ -1.32
USP4-213ENST00000488520 SEC22CQ9BRL7 303 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 FAM103A1Q9BTL3 118 aaKnown RBP6.79□□□□□ -1.32
USP4-213ENST00000488520 MCRIP2Q9BUT9 160 aaKnown RBP6.79□□□□□ -1.32
USP4-213ENST00000488520 QTRT1Q9BXR0 403 aaKnown RBP6.79□□□□□ -1.32
USP4-213ENST00000488520 HIPK2Q9H2X6 1198 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 COA4Q9NYJ1 87 aa6.79□□□□□ -1.32
USP4-213ENST00000488520 GSKIPQ9P0R6 139 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms