RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 SFXN3Q9BWM7 321 aa1.87□□□□□ -2.11
VPS41-213ENST00000485955 GABARAPL3Q9BY60 117 aa1.87□□□□□ -2.11
VPS41-213ENST00000485955 ULBP3Q9BZM4 244 aa1.87□□□□□ -2.11
VPS41-213ENST00000485955 SH3BGRL3Q9H299 93 aa1.87□□□□□ -2.11
VPS41-213ENST00000485955 UBQLN4Q9NRR5 601 aa1.87□□□□□ -2.11
VPS41-213ENST00000485955 LYRM2Q9NU23 88 aaPredicted RBP1.87□□□□□ -2.11
VPS41-213ENST00000485955 RBFOX1Q9NWB1 397 aaKnown RBP1.87□□□□□ -2.11
VPS41-213ENST00000485955 MRPL27Q9P0M9 148 aaKnown RBP1.87□□□□□ -2.11
VPS41-213ENST00000485955 TRMT112Q9UI30 125 aaKnown RBP1.87□□□□□ -2.11
VPS41-213ENST00000485955 SIGLEC7Q9Y286 467 aa1.87□□□□□ -2.11
VPS41-213ENST00000485955 BTRCQ9Y297 605 aa1.87□□□□□ -2.11
VPS41-213ENST00000485955 ATG2BQ96BY7 2078 aa1.87□□□□□ -2.11
VPS41-213ENST00000485955 RTL1A6NKG5 1358 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 DENND4AQ7Z401 1863 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 ICE1Q9Y2F5 2266 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 MYBPHLA2RUH7 354 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 C5orf49A4QMS7 147 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 TRAPPC13A5PLN9 417 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 CCDC160A6NGH7 325 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 FAM25AB3EWG3 89 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 FAM25CB3EWG5 89 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 FAM25GB3EWG6 89 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 H3BP45 60 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 PEX7O00628 323 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 PSPHP1O15172 72 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 DHRS3O75911 302 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 CDRT1O95170 752 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 CCNE2O96020 404 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 CA2P00918 260 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 IGHMP01871 453 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 APOA2P02652 100 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 C1QBP02746 253 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 RBP1P09455 135 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 SPI1P17947 270 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 CDK2P24941 298 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 PHBP35232 272 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 APLNRP35414 380 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 GLRXP35754 106 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 POLR2IP36954 125 aaKnown RBP1.86□□□□□ -2.11
VPS41-213ENST00000485955 CD200P41217 278 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 NCBP2P52298 156 aaKnown RBP eCLIP1.86□□□□□ -2.11
VPS41-213ENST00000485955 SLC18A1P54219 525 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 DAD1P61803 113 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 TBPL1P62380 186 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 RPS24P62847 133 aaKnown RBP1.86□□□□□ -2.11
VPS41-213ENST00000485955 HLA-DRB3P79483 266 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 IL15RAQ13261 267 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 RGNQ15493 299 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 UBE2SQ16763 222 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 Q499Y3 187 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 FAM222AQ5U5X8 452 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 LYPD2Q6UXB3 125 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 CLEC19AQ6UXS0 136 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 CLEC20AQ6ZU45 233 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 GOLT1AQ6ZVE7 132 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 FA2HQ7L5A8 372 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 VN1R4Q7Z5H5 301 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 OR8B12Q8NGG6 310 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 OR4D11Q8NGI4 311 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 OR2T4Q8NH00 348 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 OR4K15Q8NH41 348 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 GNPDA2Q8TDQ7 276 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 CCL17Q92583 94 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 TMEM203Q969S6 136 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 TMEM159Q96B96 161 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 TM4SF18Q96CE8 201 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 CAPZA3Q96KX2 299 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 SPACA5Q96QH8 159 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 NDFIP1Q9BT67 221 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 DOHHQ9BU89 302 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 PBDC1Q9BVG4 233 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 GNB1LQ9BYB4 327 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 RNASE7Q9H1E1 156 aaKnown RBP1.86□□□□□ -2.11
VPS41-213ENST00000485955 ACER3Q9NUN7 267 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 MED29Q9NX70 200 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 SPANXCQ9NY87 97 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 PRNDQ9UKY0 176 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 WASHC3Q9Y3C0 194 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 HEY1Q9Y5J3 304 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 ACACAQ13085 2346 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 JMJD1CQ15652 2540 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 PTPRJQ12913 1337 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 STAB1Q9NY15 2570 aa1.86□□□□□ -2.11
VPS41-213ENST00000485955 ZNF469Q96JG9 3925 aaPredicted RBP1.85□□□□□ -2.11
VPS41-213ENST00000485955 CELSR2Q9HCU4 2923 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 RYR1P21817 5038 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 PATJQ8NI35 1801 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 ZNF236Q9UL36 1845 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 MED13LQ71F56 2210 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 PKD1L1Q8TDX9 2849 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 TRAV8-3A0A0A6YYJ7 113 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 IGHV2-26A0A0B4J1V2 119 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 TRAV26-2A0A0B4J265 109 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 IGKV1-8A0A0C4DH67 115 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 LOC389332A0A1B0GUA5 103 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 ZNF850A8MQ14 1090 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 J3KT08 172 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 K7EPK0 472 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 TXNDC9O14530 226 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 FFAR1O14842 300 aa1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms