RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	ZNF121	P58317	390 aa	Predicted RBP	3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	NXPH1	P58417	271 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	FXYD4	P59646	89 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	GNB1	P62873	340 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	EGR4	Q05215	589 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	SRSF1	Q07955	248 aa	Known RBP eCLIP	3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	AES	Q08117	197 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	TCF15	Q12870	199 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	KLRD1	Q13241	179 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	LPAL2	Q16609	132 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	CLEC12B	Q2HXU8	276 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	TIGIT	Q495A1	244 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	ZNF585B	Q52M93	769 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520		Q56UQ5	140 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	FAM69B	Q5VUD6	431 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	INO80C	Q6PI98	192 aa	Predicted RBP	3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	LHFPL2	Q6ZUX7	228 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	FAM231D	Q6ZW35	169 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	TCF23	Q7RTU1	214 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	HAPLN4	Q86UW8	402 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	GCSAM	Q8N6F7	178 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	NHLRC2	Q8NBF2	726 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	ZBTB34	Q8NCN2	500 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	PRSS33	Q8NF86	280 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	OR9G1	Q8NH87	305 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	PIFO	Q8TCI5	191 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	LMX1A	Q8TE12	382 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	RERG	Q96A58	199 aa	Predicted RBP	3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	TMEM45B	Q96B21	275 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	TRIB1	Q96RU8	372 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	C19orf24	Q9BVV8	132 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	RBM24	Q9BX46	236 aa	Known RBP	3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	GGTLC1	Q9BX51	225 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	KRTAP2-2	Q9BYT5	123 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	TMEM126A	Q9H061	195 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	ARRDC1-AS1	Q9H2J1	176 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	KCNS2	Q9ULS6	477 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	SLC17A4	Q9Y2C5	497 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	MUC3A	Q02505	3323 aa		3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	SPTBN5	Q9NRC6	3674 aa	Known RBP	3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	TNRC6B	Q9UPQ9	1833 aa	Known RBP	3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	CHD3	Q12873	2000 aa	Known RBP	3.9	□□□□□ -1.79
PTCD3-212	ENST00000477520	CEP250	Q9BV73	2442 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	TRBV6-6	A0A0A6YYG2	114 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	TEX50	A0A1B0GTY4	177 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520		A0A1B0GUS0	222 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	TMEM213	A2RRL7	107 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	NPIPB11	E5RHQ5	1161 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	LMO7DN	F2Z398	122 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	RAB29	O14966	203 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	DHH	O43323	396 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	TLX3	O43711	291 aa	Predicted RBP	3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	SYNGR1	O43759	233 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	NEURL1	O76050	574 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	LEPROTL1	O95214	131 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	CLDN1	O95832	211 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	APOA2	P02652	100 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	ZNF883	P0CG24	379 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	NTF3	P20783	257 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	NPPC	P23582	126 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	OPRK1	P41145	380 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	FABP6	P51161	128 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	SUMO3	P55854	103 aa	Predicted RBP	3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	IGLV3-21	P80748	117 aa	Predicted RBP	3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	PLCXD2	Q0VAA5	305 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	TAL2	Q16559	108 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	ABHD17B	Q5VST6	288 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	LINC01545	Q5VT33	79 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	FIGLA	Q6QHK4	219 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	FAM180A	Q6UWF9	173 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	DHRS13	Q6UX07	377 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	H1FNT	Q75WM6	255 aa	Predicted RBP	3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	C6orf201	Q7Z4U5	140 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	LINC00596	Q86U02	117 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	PLXDC1	Q8IUK5	500 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	SLC22A18AS	Q8N1D0	253 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	TPRX1	Q8N7U7	411 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	BCORP1	Q8N888	145 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	WDR31	Q8NA23	367 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	SUMF1	Q8NBK3	374 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	OR8B12	Q8NGG6	310 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	OR10D3	Q8NH80	312 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	OR1L1	Q8NH94	360 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	OCC1	Q8TAD7	63 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	H1FX	Q92522	213 aa	Known RBP	3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	TSACC	Q96A04	125 aa	Predicted RBP	3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	ADTRP	Q96IZ2	230 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	HARBI1	Q96MB7	349 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	RAB1B	Q9H0U4	201 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	FNDC4	Q9H6D8	234 aa	Predicted RBP	3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	VSIR	Q9H7M9	311 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	FGF22	Q9HCT0	170 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	PNRC2	Q9NPJ4	139 aa	Known RBP	3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	TMEM167B	Q9NRX6	74 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	LIN7C	Q9NUP9	197 aa	Known RBP	3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	TMEM74B	Q9NUR3	256 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	HIGD1B	Q9P298	99 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	RALY	Q9UKM9	306 aa	Known RBP	3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	PLAGL1	Q9UM63	463 aa		3.89	□□□□□ -1.79
PTCD3-212	ENST00000477520	TSSC4	Q9Y5U2	329 aa	Predicted RBP	3.89	□□□□□ -1.79

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