RNA–Protein interactions for RNA: ENST00000454398.1

HLA-DPA3-207, Transcript of major histocompatibility complex, class II, DP alpha 3 (pseudogene), humanhuman

BASIC

Gene HLA-DPA3, Length 229 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA3-207ENST00000454398 C21orf62Q9NYP8 219 aa4.37□□□□□ -1.71
HLA-DPA3-207ENST00000454398 HERC1Q15751 4861 aa4.37□□□□□ -1.71
HLA-DPA3-207ENST00000454398 FAT1Q14517 4588 aa4.37□□□□□ -1.71
HLA-DPA3-207ENST00000454398 TRAV1-2A0A0B4J238 106 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 IGHV7-4-1A0A0J9YVY3 117 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 MARCH11A6NNE9 402 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 KNCNA6PVL3 124 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 MPTX1A8MV57 137 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 UBE2CO00762 179 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 PDCD5O14737 125 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 CHEK1O14757 476 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 KRASP01116 189 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 RBMY1A1P0DJD3 496 aaKnown RBP4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 RBMY1CP0DJD4 496 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 PTBP1P26599 531 aaKnown RBP eCLIP4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 HLA-DMBP28068 263 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 G6PCP35575 357 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 DEFB131AP59861 70 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 MXD1Q05195 221 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 RBMY1FQ15415 496 aaKnown RBP4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 TRAM1Q15629 374 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 IZUMO4Q1ZYL8 232 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 KLK9Q2XQG4 91 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 CNIH2Q6PI25 160 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 GSG1LQ6UXU4 331 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 ZNF66Q6ZN08 573 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 TCF24Q7RTU0 167 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 PRSS48Q7RTY5 328 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 TMEM116Q8NCL8 245 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 BEST4Q8NFU0 473 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 OR4A5Q8NH83 315 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 PINX1Q96BK5 328 aaKnown RBP4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 GALNT14Q96FL9 552 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 BSCL2Q96G97 398 aaPredicted RBP4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 CSTL1Q9H114 145 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 KLK9Q9UKQ9 250 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 APLNQ9ULZ1 77 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 TPRKBQ9Y3C4 175 aa4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 F11RQ9Y624 299 aaKnown RBP4.36□□□□□ -1.71
HLA-DPA3-207ENST00000454398 IGLV2-18A0A075B6J9 118 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 IGHV4-4A0A075B6R2 117 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 TRAV18A0A075B6X5 111 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 ELOA3CA0A087WX78 387 aaPredicted RBP4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 TEX50A0A1B0GTY4 177 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 BOLA2-SMG1P6H3BVE0 249 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 NDUFA4O00483 81 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 RTL8CO15255 209 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 TNFAIP8O95379 198 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 IFNA4P05014 189 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 SERPINE2P07093 398 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 CTSGP08311 255 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 GIG44P09565 113 aaPredicted RBP4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 ZNF688P0C7X2 276 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 TRAPPC2P0DI81 140 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 TRAPPC2BP0DI82 140 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 NQO2P16083 231 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 ATF4P18848 351 aaPredicted RBP4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 PSMB9P28065 219 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 RPL5P46777 297 aaKnown RBP4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 ELLP55199 621 aaPredicted RBP4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 TAS2R31P59538 309 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 HERV-K104P61576 105 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 RPL11P62913 178 aaKnown RBP4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 CATR1Q13166 79 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 PHLDA2Q53GA4 152 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 LAMTOR1Q6IAA8 161 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 SFXN4Q6P4A7 337 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 ZBTB8BQ8NAP8 495 aaPredicted RBP4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 VN1R17PQ8TDU5 208 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 FCAMRQ8WWV6 532 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 LSM10Q969L4 123 aaKnown RBP4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 SLC25A46Q96AG3 418 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 C6orf62Q9GZU0 229 aaPredicted RBP4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 MFFQ9GZY8 342 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 MS4A6AQ9H2W1 248 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 NDUFA4L2Q9NRX3 87 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 EHFQ9NZC4 300 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 SMPXQ9UHP9 88 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 RABAC1Q9UI14 185 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 BLOC1S6Q9UL45 172 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 OR51B2Q9Y5P1 312 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 ETV7Q9Y603 341 aa4.35□□□□□ -1.71
HLA-DPA3-207ENST00000454398 LOC100506127A0A0U1RQW1 187 aa4.34□□□□□ -1.71
HLA-DPA3-207ENST00000454398 TRDV1A0A1B0GX56 115 aa4.34□□□□□ -1.71
HLA-DPA3-207ENST00000454398 C15orf62A8K5M9 175 aa4.34□□□□□ -1.71
HLA-DPA3-207ENST00000454398 NOTOA8MTQ0 251 aa4.34□□□□□ -1.71
HLA-DPA3-207ENST00000454398 ST8SIA3O43173 380 aa4.34□□□□□ -1.71
HLA-DPA3-207ENST00000454398 RBFOX2O43251 390 aaKnown RBP eCLIP4.34□□□□□ -1.71
HLA-DPA3-207ENST00000454398 DFFBO76075 338 aa4.34□□□□□ -1.71
HLA-DPA3-207ENST00000454398 SLC22A5O76082 557 aa4.34□□□□□ -1.71
HLA-DPA3-207ENST00000454398 MT-CO2P00403 227 aa4.34□□□□□ -1.71
HLA-DPA3-207ENST00000454398 HPRT1P00492 218 aa4.34□□□□□ -1.71
HLA-DPA3-207ENST00000454398 CTXN2P0C2S0 81 aa4.34□□□□□ -1.71
HLA-DPA3-207ENST00000454398 SDC2P34741 201 aa4.34□□□□□ -1.71
HLA-DPA3-207ENST00000454398 TGFBR1P36897 503 aa4.34□□□□□ -1.71
HLA-DPA3-207ENST00000454398 LPAR6P43657 344 aa4.34□□□□□ -1.71
HLA-DPA3-207ENST00000454398 RFX2P48378 723 aa4.34□□□□□ -1.71
HLA-DPA3-207ENST00000454398 HSPA13P48723 471 aa4.34□□□□□ -1.71
HLA-DPA3-207ENST00000454398 DEFB1P60022 68 aa4.34□□□□□ -1.71
HLA-DPA3-207ENST00000454398 ERVK-16P61578 105 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms