RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 IGHV1-69DA0A0B4J2H0 117 aa11.39□□□□□ -0.59
USP39-207ENST00000450066 IGHV1-69P01742 117 aa11.39□□□□□ -0.59
USP39-207ENST00000450066 FGF7P21781 194 aa11.39□□□□□ -0.59
USP39-207ENST00000450066 HIF1ANQ9NWT6 349 aa11.39□□□□□ -0.59
USP39-207ENST00000450066 FNDC10F2Z333 226 aa11.39□□□□□ -0.59
USP39-207ENST00000450066 MPDU1O75352 247 aa11.39□□□□□ -0.59
USP39-207ENST00000450066 FAM106CPP0CH98 169 aa11.39□□□□□ -0.59
USP39-207ENST00000450066 BRS3P32247 399 aa11.39□□□□□ -0.59
USP39-207ENST00000450066 LOXL1Q08397 574 aaPredicted RBP11.39□□□□□ -0.59
USP39-207ENST00000450066 ZNF616Q08AN1 781 aa11.39□□□□□ -0.59
USP39-207ENST00000450066 IL34Q6ZMJ4 242 aa11.39□□□□□ -0.59
USP39-207ENST00000450066 FAM213BQ8TBF2 198 aa11.39□□□□□ -0.59
USP39-207ENST00000450066 NPCDR1Q9BY65 106 aa11.39□□□□□ -0.59
USP39-207ENST00000450066 C7orf69Q9H7B7 122 aa11.39□□□□□ -0.59
USP39-207ENST00000450066 CELSR1Q9NYQ6 3014 aa11.38□□□□□ -0.59
USP39-207ENST00000450066 IGLC7A0M8Q6 106 aa11.38□□□□□ -0.59
USP39-207ENST00000450066 RAB19A4D1S5 217 aa11.38□□□□□ -0.59
USP39-207ENST00000450066 FCN1O00602 326 aa11.38□□□□□ -0.59
USP39-207ENST00000450066 OR13C7P0DN81 318 aa11.38□□□□□ -0.59
USP39-207ENST00000450066 SUB1P53999 127 aaKnown RBP eCLIP11.38□□□□□ -0.596e-9■■■□□ 18
USP39-207ENST00000450066 GNB1P62873 340 aa11.38□□□□□ -0.59
USP39-207ENST00000450066 SSBP2P81877 361 aaPredicted RBP11.38□□□□□ -0.59
USP39-207ENST00000450066 TREML4Q6UXN2 200 aa11.38□□□□□ -0.59
USP39-207ENST00000450066 LINC01356Q8N9X3 169 aa11.38□□□□□ -0.59
USP39-207ENST00000450066 NPVFQ9HCQ7 196 aa11.38□□□□□ -0.59
USP39-207ENST00000450066 SMCO3A2RU48 225 aa11.37□□□□□ -0.59
USP39-207ENST00000450066 C5orf64Q2M2E5 130 aa11.37□□□□□ -0.59
USP39-207ENST00000450066 FBLN7Q53RD9 439 aa11.37□□□□□ -0.59
USP39-207ENST00000450066 ARSJQ5FYB0 599 aaPredicted RBP11.37□□□□□ -0.59
USP39-207ENST00000450066 Q5PR19 223 aa11.37□□□□□ -0.59
USP39-207ENST00000450066 ZNF709Q8N972 641 aa11.37□□□□□ -0.59
USP39-207ENST00000450066 TRAV40A0A0B4J280 105 aa11.37□□□□□ -0.59
USP39-207ENST00000450066 C17orf112F2Z3M2 114 aa11.37□□□□□ -0.59
USP39-207ENST00000450066 I3L521 148 aa11.37□□□□□ -0.59
USP39-207ENST00000450066 TMEM11P17152 192 aa11.37□□□□□ -0.59
USP39-207ENST00000450066 PRSS57Q6UWY2 283 aa11.37□□□□□ -0.59
USP39-207ENST00000450066 ZNF114Q8NC26 417 aa11.37□□□□□ -0.59
USP39-207ENST00000450066 SRSF12Q8WXF0 261 aaKnown RBP11.37□□□□□ -0.59
USP39-207ENST00000450066 P2RX4Q99571 388 aa11.37□□□□□ -0.59
USP39-207ENST00000450066 SRSF8Q9BRL6 282 aaKnown RBP11.37□□□□□ -0.59
USP39-207ENST00000450066 TEX22C9J3V5 150 aa11.36□□□□□ -0.59
USP39-207ENST00000450066 TSPAN15O95858 294 aa11.36□□□□□ -0.59
USP39-207ENST00000450066 UQCC3Q6UW78 93 aa11.36□□□□□ -0.59
USP39-207ENST00000450066 RNASEH2CQ8TDP1 164 aaKnown RBP11.36□□□□□ -0.59
USP39-207ENST00000450066 RPRMQ9NS64 109 aa11.36□□□□□ -0.59
USP39-207ENST00000450066 LSM4Q9Y4Z0 139 aaKnown RBP11.36□□□□□ -0.59
USP39-207ENST00000450066 NCBP2LA6PVI3 153 aaKnown RBP11.36□□□□□ -0.59
USP39-207ENST00000450066 RNF223E7ERA6 249 aa11.36□□□□□ -0.59
USP39-207ENST00000450066 PLXNB1O43157 2135 aa11.36□□□□□ -0.59
USP39-207ENST00000450066 CNIH1O95406 144 aa11.36□□□□□ -0.59
USP39-207ENST00000450066 GPX4P36969 197 aaPredicted RBP11.36□□□□□ -0.59
USP39-207ENST00000450066 TMEM41BQ5BJD5 291 aa11.36□□□□□ -0.59
USP39-207ENST00000450066 FAM120AOSQ5T036 256 aa11.36□□□□□ -0.59
USP39-207ENST00000450066 RUSC1-AS1Q66K80 236 aa11.36□□□□□ -0.59
USP39-207ENST00000450066 HIST2H2BCQ6DN03 193 aa11.36□□□□□ -0.59
USP39-207ENST00000450066 COMMD1Q8N668 190 aa11.36□□□□□ -0.59
USP39-207ENST00000450066 CACNG8Q8WXS5 425 aa11.36□□□□□ -0.59
USP39-207ENST00000450066 CSMD1Q96PZ7 3565 aa11.35□□□□□ -0.59
USP39-207ENST00000450066 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.35□□□□□ -0.592e-7■■■■■ 31.3
USP39-207ENST00000450066 IGHV3OR16-10A0A075B7F0 116 aa11.35□□□□□ -0.59
USP39-207ENST00000450066 SOX15O60248 233 aa11.35□□□□□ -0.59
USP39-207ENST00000450066 MBP02144 154 aa11.35□□□□□ -0.59
USP39-207ENST00000450066 H2AFB1P0C5Y9 115 aa11.35□□□□□ -0.59
USP39-207ENST00000450066 IGHV4-38-2P0DP08 117 aa11.35□□□□□ -0.59
USP39-207ENST00000450066 AREGP15514 252 aa11.35□□□□□ -0.59
USP39-207ENST00000450066 CD69Q07108 199 aa11.35□□□□□ -0.59
USP39-207ENST00000450066 TOR2AQ5JU69 321 aa11.35□□□□□ -0.59
USP39-207ENST00000450066 PVRIGQ6DKI7 326 aa11.35□□□□□ -0.59
USP39-207ENST00000450066 TEPPQ6URK8 271 aa11.35□□□□□ -0.59
USP39-207ENST00000450066 VSIRQ9H7M9 311 aa11.35□□□□□ -0.59
USP39-207ENST00000450066 C1RLQ9NZP8 487 aa11.35□□□□□ -0.59
USP39-207ENST00000450066 NAV3Q8IVL0 2385 aa11.34□□□□□ -0.59
USP39-207ENST00000450066 REG1AP05451 166 aa11.34□□□□□ -0.59
USP39-207ENST00000450066 ELLP55199 621 aaPredicted RBP11.34□□□□□ -0.59
USP39-207ENST00000450066 AKR1C1Q04828 323 aa11.34□□□□□ -0.59
USP39-207ENST00000450066 ZNF562Q6V9R5 426 aa11.34□□□□□ -0.59
USP39-207ENST00000450066 BRD3OSQ6XYD6 125 aa11.34□□□□□ -0.59
USP39-207ENST00000450066 MGST2Q99735 147 aa11.34□□□□□ -0.59
USP39-207ENST00000450066 MEGF9Q9H1U4 602 aa11.34□□□□□ -0.59
USP39-207ENST00000450066 ZANQ9Y493 2812 aa11.34□□□□□ -0.59
USP39-207ENST00000450066 J3QLI3 93 aa11.34□□□□□ -0.59
USP39-207ENST00000450066 OPRK1P41145 380 aa11.34□□□□□ -0.59
USP39-207ENST00000450066 GAMTQ14353 236 aa11.34□□□□□ -0.59
USP39-207ENST00000450066 ACSM6Q6P461 480 aa11.34□□□□□ -0.59
USP39-207ENST00000450066 TMEM144Q7Z5S9 345 aa11.34□□□□□ -0.59
USP39-207ENST00000450066 OR1P1Q8NH06 330 aa11.34□□□□□ -0.59
USP39-207ENST00000450066 SSMEM1Q8WWF3 244 aa11.34□□□□□ -0.59
USP39-207ENST00000450066 RAB31Q13636 194 aa11.33□□□□□ -0.6
USP39-207ENST00000450066 FXYD3Q14802 87 aa11.33□□□□□ -0.6
USP39-207ENST00000450066 FFAR4Q5NUL3 377 aa11.33□□□□□ -0.6
USP39-207ENST00000450066 KRTAP1-3Q8IUG1 177 aa11.33□□□□□ -0.6
USP39-207ENST00000450066 LFNGQ8NES3 379 aa11.33□□□□□ -0.6
USP39-207ENST00000450066 SFT2D1Q8WV19 159 aa11.33□□□□□ -0.6
USP39-207ENST00000450066 GGTLC1Q9BX51 225 aa11.33□□□□□ -0.6
USP39-207ENST00000450066 KCNIP2Q9NS61 270 aa11.33□□□□□ -0.6
USP39-207ENST00000450066 TRAV1-1A0A0B4J248 108 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 A0A0U1RQK1 487 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 BTBD17A6NE02 478 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 KRBOX1C9JBD0 128 aa11.32□□□□□ -0.6
USP39-207ENST00000450066 AGPAT2O15120 278 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms