RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 K7EIM0 57 aa12.72□□□□□ -0.37
TRIM39-209ENST00000428728 NDUFA4O00483 81 aa12.72□□□□□ -0.37
TRIM39-209ENST00000428728 TNFAIP8O95379 198 aa12.72□□□□□ -0.37
TRIM39-209ENST00000428728 S100GP29377 79 aa12.72□□□□□ -0.37
TRIM39-209ENST00000428728 TBC1D26Q86UD7 250 aa12.72□□□□□ -0.37
TRIM39-209ENST00000428728 OR5B3Q8NH48 314 aa12.72□□□□□ -0.37
TRIM39-209ENST00000428728 TMEM56Q96MV1 263 aa12.72□□□□□ -0.37
TRIM39-209ENST00000428728 TSPAN4O14817 238 aa12.71□□□□□ -0.37
TRIM39-209ENST00000428728 ADMP35318 185 aa12.71□□□□□ -0.37
TRIM39-209ENST00000428728 RNASE12Q5GAN4 147 aaKnown RBP12.71□□□□□ -0.37
TRIM39-209ENST00000428728 MISP3Q96FF7 219 aa12.71□□□□□ -0.37
TRIM39-209ENST00000428728 TSC22D3Q99576 134 aa12.71□□□□□ -0.37
TRIM39-209ENST00000428728 TMEM14BQ9NUH8 114 aa12.71□□□□□ -0.37
TRIM39-209ENST00000428728 FKBP11Q9NYL4 201 aa12.71□□□□□ -0.37
TRIM39-209ENST00000428728 SMIM31A0A1B0GVY4 71 aa12.7□□□□□ -0.38
TRIM39-209ENST00000428728 APOA1P02647 267 aa12.7□□□□□ -0.38
TRIM39-209ENST00000428728 RCVRNP35243 200 aa12.7□□□□□ -0.38
TRIM39-209ENST00000428728 VBP1P61758 197 aa12.7□□□□□ -0.38
TRIM39-209ENST00000428728 PMS2P11Q13670 270 aa12.7□□□□□ -0.38
TRIM39-209ENST00000428728 DEFB135Q30KP9 77 aa12.7□□□□□ -0.38
TRIM39-209ENST00000428728 ODF3L2Q3SX64 289 aa12.7□□□□□ -0.38
TRIM39-209ENST00000428728 LAMTOR1Q6IAA8 161 aa12.7□□□□□ -0.38
TRIM39-209ENST00000428728 H2BFWTQ7Z2G1 175 aa12.7□□□□□ -0.38
TRIM39-209ENST00000428728 CADM3Q8N126 398 aa12.7□□□□□ -0.38
TRIM39-209ENST00000428728 MRGPRFQ96AM1 343 aa12.7□□□□□ -0.38
TRIM39-209ENST00000428728 FUNDC2Q9BWH2 189 aa12.7□□□□□ -0.38
TRIM39-209ENST00000428728 M0QYG6 137 aa12.69□□□□□ -0.38
TRIM39-209ENST00000428728 HPGDSO60760 199 aa12.69□□□□□ -0.38
TRIM39-209ENST00000428728 IGKV1-39P01597 117 aa12.69□□□□□ -0.38
TRIM39-209ENST00000428728 IGKV1D-39P04432 117 aa12.69□□□□□ -0.38
TRIM39-209ENST00000428728 APOC4P55056 127 aa12.69□□□□□ -0.38
TRIM39-209ENST00000428728 LPCAT3Q6P1A2 487 aa12.69□□□□□ -0.38
TRIM39-209ENST00000428728 OR1P1Q8NH06 330 aa12.69□□□□□ -0.38
TRIM39-209ENST00000428728 OR4A16Q8NH70 328 aa12.69□□□□□ -0.38
TRIM39-209ENST00000428728 SEC22AQ96IW7 307 aa12.69□□□□□ -0.38
TRIM39-209ENST00000428728 ATP6V0BQ99437 205 aa12.69□□□□□ -0.38
TRIM39-209ENST00000428728 SCPEP1Q9HB40 452 aa12.69□□□□□ -0.38
TRIM39-209ENST00000428728 IGHV3-49A0A0A0MS15 119 aa12.68□□□□□ -0.38
TRIM39-209ENST00000428728 A0A0J9YWU9 116 aa12.68□□□□□ -0.38
TRIM39-209ENST00000428728 OR4C46A6NHA9 309 aa12.68□□□□□ -0.38
TRIM39-209ENST00000428728 IGHV3-48P01763 117 aa12.68□□□□□ -0.38
TRIM39-209ENST00000428728 CTSDP07339 412 aaPredicted RBP12.68□□□□□ -0.38
TRIM39-209ENST00000428728 RPL35AP18077 110 aaKnown RBP12.68□□□□□ -0.38
TRIM39-209ENST00000428728 ELK1P19419 428 aa12.68□□□□□ -0.38
TRIM39-209ENST00000428728 DNAH1Q9P2D7 4330 aa12.68□□□□□ -0.38
TRIM39-209ENST00000428728 CXorf65A6NEN9 183 aa12.67□□□□□ -0.38
TRIM39-209ENST00000428728 C15orf62A8K5M9 175 aa12.67□□□□□ -0.38
TRIM39-209ENST00000428728 FAM25AB3EWG3 89 aa12.67□□□□□ -0.38
TRIM39-209ENST00000428728 FAM25CB3EWG5 89 aa12.67□□□□□ -0.38
TRIM39-209ENST00000428728 FAM25GB3EWG6 89 aa12.67□□□□□ -0.38
TRIM39-209ENST00000428728 K7EMT4 169 aa12.67□□□□□ -0.38
TRIM39-209ENST00000428728 NUPL2O15504 423 aaKnown RBP12.67□□□□□ -0.38
TRIM39-209ENST00000428728 SPRY2O43597 315 aa12.67□□□□□ -0.38
TRIM39-209ENST00000428728 YIF1AO95070 293 aa12.67□□□□□ -0.38
TRIM39-209ENST00000428728 CTSGP08311 255 aa12.67□□□□□ -0.38
TRIM39-209ENST00000428728 PRCDQ00LT1 54 aa12.67□□□□□ -0.38
TRIM39-209ENST00000428728 RELQ04864 619 aaPredicted RBP12.67□□□□□ -0.38
TRIM39-209ENST00000428728 IZUMO4Q1ZYL8 232 aa12.67□□□□□ -0.38
TRIM39-209ENST00000428728 SPINK9Q5DT21 86 aa12.67□□□□□ -0.38
TRIM39-209ENST00000428728 PINX1Q96BK5 328 aaKnown RBP12.67□□□□□ -0.38
TRIM39-209ENST00000428728 ZNF414Q96IQ9 312 aa12.67□□□□□ -0.38
TRIM39-209ENST00000428728 FAM212BQ9NTI7 297 aaPredicted RBP12.67□□□□□ -0.38
TRIM39-209ENST00000428728 IGKV3-7A0A075B6H7 116 aa12.66□□□□□ -0.38
TRIM39-209ENST00000428728 I3L2K1 104 aa12.66□□□□□ -0.38
TRIM39-209ENST00000428728 PGAM2P15259 253 aa12.66□□□□□ -0.38
TRIM39-209ENST00000428728 TFPI2P48307 235 aa12.66□□□□□ -0.38
TRIM39-209ENST00000428728 MFAP4P55083 255 aa12.66□□□□□ -0.38
TRIM39-209ENST00000428728 UCP3P55916 312 aa12.66□□□□□ -0.38
TRIM39-209ENST00000428728 EWSR1Q01844 656 aaKnown RBP eCLIP12.66□□□□□ -0.38
TRIM39-209ENST00000428728 Q6ZWC4 215 aa12.66□□□□□ -0.38
TRIM39-209ENST00000428728 LYG2Q86SG7 212 aa12.66□□□□□ -0.38
TRIM39-209ENST00000428728 CMTM3Q96MX0 182 aa12.66□□□□□ -0.38
TRIM39-209ENST00000428728 RNF2Q99496 336 aa12.66□□□□□ -0.38
TRIM39-209ENST00000428728 SMPXQ9UHP9 88 aa12.66□□□□□ -0.38
TRIM39-209ENST00000428728 IGHV3OR16-13A0A075B7E8 117 aa12.65□□□□□ -0.38
TRIM39-209ENST00000428728 IGHV3-74A0A0B4J1X5 117 aa12.65□□□□□ -0.38
TRIM39-209ENST00000428728 IGHV7-4-1A0A0J9YVY3 117 aa12.65□□□□□ -0.38
TRIM39-209ENST00000428728 MT-CO2P00403 227 aa12.65□□□□□ -0.38
TRIM39-209ENST00000428728 PI3P19957 117 aa12.65□□□□□ -0.38
TRIM39-209ENST00000428728 BMI1P35226 326 aa12.65□□□□□ -0.38
TRIM39-209ENST00000428728 APRG1Q8IVJ8 170 aa12.65□□□□□ -0.38
TRIM39-209ENST00000428728 ZNF114Q8NC26 417 aa12.65□□□□□ -0.38
TRIM39-209ENST00000428728 TMEM116Q8NCL8 245 aa12.65□□□□□ -0.38
TRIM39-209ENST00000428728 RHPN1-AS1Q9BWJ2 59 aa12.65□□□□□ -0.38
TRIM39-209ENST00000428728 TP53TG1Q9Y2A0 90 aa12.65□□□□□ -0.38
TRIM39-209ENST00000428728 UBE2CO00762 179 aa12.64□□□□□ -0.39
TRIM39-209ENST00000428728 CHEK1O14757 476 aa12.64□□□□□ -0.39
TRIM39-209ENST00000428728 GNG7O60262 68 aa12.64□□□□□ -0.39
TRIM39-209ENST00000428728 AKR1C2P52895 323 aa12.64□□□□□ -0.39
TRIM39-209ENST00000428728 PPP5CP53041 499 aa12.64□□□□□ -0.39
TRIM39-209ENST00000428728 ZNF124Q15973 351 aa12.64□□□□□ -0.39
TRIM39-209ENST00000428728 RNASE10Q5GAN6 216 aaKnown RBP12.64□□□□□ -0.39
TRIM39-209ENST00000428728 WFDC3Q8IUB2 231 aa12.64□□□□□ -0.39
TRIM39-209ENST00000428728 STPG3Q8N7X2 389 aa12.64□□□□□ -0.39
TRIM39-209ENST00000428728 KIR2DL5BA0A0G2JN68 375 aa12.63□□□□□ -0.39
TRIM39-209ENST00000428728 KIR2DL5BA0A0G2JPC4 375 aa12.63□□□□□ -0.39
TRIM39-209ENST00000428728 FCGR2BP31994 310 aaPredicted RBP12.63□□□□□ -0.39
TRIM39-209ENST00000428728 RORCP51449 518 aa12.63□□□□□ -0.39
TRIM39-209ENST00000428728 PIGPP57054 158 aa12.63□□□□□ -0.39
TRIM39-209ENST00000428728 HSPE1P61604 102 aaKnown RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms