RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 SCARB1Q8WTV0 552 aa8.62□□□□□ -1.03
SQSTM1-203ENST00000422245 CMTM3Q96MX0 182 aa8.62□□□□□ -1.03
SQSTM1-203ENST00000422245 TMEM14BQ9NUH8 114 aa8.62□□□□□ -1.03
SQSTM1-203ENST00000422245 NSG2Q9Y328 171 aa8.62□□□□□ -1.03
SQSTM1-203ENST00000422245 SMIM31A0A1B0GVY4 71 aa8.61□□□□□ -1.03
SQSTM1-203ENST00000422245 OR4C46A6NHA9 309 aa8.61□□□□□ -1.03
SQSTM1-203ENST00000422245 K7EIM0 57 aa8.61□□□□□ -1.03
SQSTM1-203ENST00000422245 APOA1P02647 267 aa8.61□□□□□ -1.03
SQSTM1-203ENST00000422245 RCVRNP35243 200 aa8.61□□□□□ -1.03
SQSTM1-203ENST00000422245 TSPAN5P62079 268 aa8.61□□□□□ -1.03
SQSTM1-203ENST00000422245 PHLDA2Q53GA4 152 aa8.61□□□□□ -1.03
SQSTM1-203ENST00000422245 Q56UQ5 140 aa8.61□□□□□ -1.03
SQSTM1-203ENST00000422245 UBAC2Q8NBM4 344 aa8.61□□□□□ -1.03
SQSTM1-203ENST00000422245 OVOL2Q9BRP0 275 aa8.61□□□□□ -1.03
SQSTM1-203ENST00000422245 CHRDL1Q9BU40 450 aa8.61□□□□□ -1.03
SQSTM1-203ENST00000422245 C20orf24Q9BUV8 137 aa8.61□□□□□ -1.03
SQSTM1-203ENST00000422245 COMMD3Q9UBI1 195 aa8.61□□□□□ -1.03
SQSTM1-203ENST00000422245 TP53TG1Q9Y2A0 90 aa8.61□□□□□ -1.03
SQSTM1-203ENST00000422245 IGHV3-21A0A0B4J1V1 117 aa8.6□□□□□ -1.03
SQSTM1-203ENST00000422245 C15orf62A8K5M9 175 aa8.6□□□□□ -1.03
SQSTM1-203ENST00000422245 F8W735 103 aaPredicted RBP8.6□□□□□ -1.03
SQSTM1-203ENST00000422245 K7EMT4 169 aa8.6□□□□□ -1.03
SQSTM1-203ENST00000422245 ADMP35318 185 aa8.6□□□□□ -1.03
SQSTM1-203ENST00000422245 UCP3P55916 312 aa8.6□□□□□ -1.03
SQSTM1-203ENST00000422245 RELQ04864 619 aaPredicted RBP8.6□□□□□ -1.03
SQSTM1-203ENST00000422245 Q6ZWC4 215 aa8.6□□□□□ -1.03
SQSTM1-203ENST00000422245 TBC1D26Q86UD7 250 aa8.6□□□□□ -1.03
SQSTM1-203ENST00000422245 LYSMD2Q8IV50 215 aa8.6□□□□□ -1.03
SQSTM1-203ENST00000422245 ZNF114Q8NC26 417 aa8.6□□□□□ -1.03
SQSTM1-203ENST00000422245 KIR2DL5BA0A0G2JN68 375 aa8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 KIR2DL5BA0A0G2JPC4 375 aa8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 DBX1A6NMT0 343 aa8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 UBE2CO00762 179 aa8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 NUPL2O15504 423 aaKnown RBP8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 FCGR2BP31994 310 aaPredicted RBP8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 BMI1P35226 326 aa8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 NCS1P62166 190 aa8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 PRCDQ00LT1 54 aa8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 ODF3L2Q3SX64 289 aa8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 H2BFWTQ7Z2G1 175 aa8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 WFDC3Q8IUB2 231 aa8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 SNX29P2Q8IUI4 249 aa8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 KIR2DL5AQ8N109 375 aa8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 OR4A16Q8NH70 328 aa8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 KIR2DL5BQ8NHK3 375 aa8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 SEC22AQ96IW7 307 aa8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 UBQLN2Q9UHD9 624 aa8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 PLECQ15149 4684 aaKnown RBP8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 HYDINQ4G0P3 5121 aa8.59□□□□□ -1.03
SQSTM1-203ENST00000422245 IGHV3OR16-8A0A075B7F1 116 aa8.58□□□□□ -1.04
SQSTM1-203ENST00000422245 I3L2K1 104 aa8.58□□□□□ -1.04
SQSTM1-203ENST00000422245 CTSGP08311 255 aa8.58□□□□□ -1.04
SQSTM1-203ENST00000422245 MRGPRFQ96AM1 343 aa8.58□□□□□ -1.04
SQSTM1-203ENST00000422245 MISP3Q96FF7 219 aa8.58□□□□□ -1.04
SQSTM1-203ENST00000422245 TXN2Q99757 166 aa8.58□□□□□ -1.04
SQSTM1-203ENST00000422245 FUNDC2Q9BWH2 189 aa8.58□□□□□ -1.04
SQSTM1-203ENST00000422245 C6orf62Q9GZU0 229 aaPredicted RBP8.58□□□□□ -1.04
SQSTM1-203ENST00000422245 SMPXQ9UHP9 88 aa8.58□□□□□ -1.04
SQSTM1-203ENST00000422245 IGHV7-4-1A0A0J9YVY3 117 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 CXorf65A6NEN9 183 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 NUPR2A6NF83 97 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 SPRY2O43597 315 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 ZNF207O43670 478 aaKnown RBP8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 YIF1AO95070 293 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 IGKV1-39P01597 117 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 IGKV1D-39P04432 117 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 CTSDP07339 412 aaPredicted RBP8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 ATF4P18848 351 aaPredicted RBP8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 ELK1P19419 428 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 MFAP4P55083 255 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 RND3P61587 244 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 VBP1P61758 197 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 TNFRSF9Q07011 255 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 DEFB135Q30KP9 77 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 LYG2Q86SG7 212 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 STPG3Q8N7X2 389 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 TMEM116Q8NCL8 245 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 AP3S1Q92572 193 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 GALNT14Q96FL9 552 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 ZNF486Q96H40 463 aaPredicted RBP8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 OR10C1Q96KK4 312 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 RHPN1-AS1Q9BWJ2 59 aa8.57□□□□□ -1.04
SQSTM1-203ENST00000422245 A0A0J9YWU9 116 aa8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 M0QYG6 137 aa8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 CHEK1O14757 476 aa8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 GNG7O60262 68 aa8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 HPGDSO60760 199 aa8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 ATG12O94817 140 aa8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 MT-CO2P00403 227 aa8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 PGAM2P15259 253 aa8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 TBPP20226 339 aa8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 RORCP51449 518 aa8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 HSPE1P61604 102 aaKnown RBP8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 ERHP84090 104 aaKnown RBP8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 RNASE10Q5GAN6 216 aaKnown RBP8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 MZT2AQ6P582 158 aa8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 ARRDC1Q8N5I2 433 aa8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 TMEM217Q8N7C4 229 aa8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 ZNF414Q96IQ9 312 aa8.56□□□□□ -1.04
SQSTM1-203ENST00000422245 RNF2Q99496 336 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms