RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 SSX2Q16385 188 aa10.79□□□□□ -0.68
LIMS1-204ENST00000409441 POU2AF1Q16633 256 aa10.79□□□□□ -0.68
LIMS1-204ENST00000409441 KHDC3LQ587J8 217 aa10.79□□□□□ -0.68
LIMS1-204ENST00000409441 C9orf139Q6ZV77 190 aa10.79□□□□□ -0.68
LIMS1-204ENST00000409441 ZNF429Q86V71 674 aa10.79□□□□□ -0.68
LIMS1-204ENST00000409441 ZDHHC16Q969W1 377 aa10.79□□□□□ -0.68
LIMS1-204ENST00000409441 ST6GALNAC6Q969X2 333 aa10.79□□□□□ -0.68
LIMS1-204ENST00000409441 RPRMQ9NS64 109 aa10.79□□□□□ -0.68
LIMS1-204ENST00000409441 HILPDAQ9Y5L2 63 aa10.79□□□□□ -0.68
LIMS1-204ENST00000409441 SOX15O60248 233 aa10.78□□□□□ -0.68
LIMS1-204ENST00000409441 MBP02144 154 aa10.78□□□□□ -0.68
LIMS1-204ENST00000409441 SRD5A1P18405 259 aa10.78□□□□□ -0.68
LIMS1-204ENST00000409441 PAX6P26367 422 aa10.78□□□□□ -0.68
LIMS1-204ENST00000409441 IL3RAP26951 378 aa10.78□□□□□ -0.68
LIMS1-204ENST00000409441 DIAPH2-AS1Q14236 149 aa10.78□□□□□ -0.68
LIMS1-204ENST00000409441 DYNAPQ8N1N2 210 aa10.78□□□□□ -0.68
LIMS1-204ENST00000409441 SMCO4Q9NRQ5 59 aa10.78□□□□□ -0.68
LIMS1-204ENST00000409441 TMEM140Q9NV12 185 aa10.78□□□□□ -0.68
LIMS1-204ENST00000409441 A0A1B0GV50 99 aa10.77□□□□□ -0.68
LIMS1-204ENST00000409441 IFNA17P01571 189 aa10.77□□□□□ -0.68
LIMS1-204ENST00000409441 ZNF137PP52743 207 aa10.77□□□□□ -0.68
LIMS1-204ENST00000409441 RELBQ01201 579 aa10.77□□□□□ -0.68
LIMS1-204ENST00000409441 PMS2P11Q13670 270 aa10.77□□□□□ -0.68
LIMS1-204ENST00000409441 RHEBQ15382 184 aa10.77□□□□□ -0.68
LIMS1-204ENST00000409441 SOHLH1Q5JUK2 328 aa10.77□□□□□ -0.68
LIMS1-204ENST00000409441 TPTE2P1Q5T6R2 138 aa10.77□□□□□ -0.68
LIMS1-204ENST00000409441 TMEM88Q6PEY1 159 aa10.77□□□□□ -0.68
LIMS1-204ENST00000409441 CBLN2Q8IUK8 224 aa10.77□□□□□ -0.68
LIMS1-204ENST00000409441 OR10G4Q8NGN3 311 aa10.77□□□□□ -0.68
LIMS1-204ENST00000409441 RPEQ96AT9 228 aa10.77□□□□□ -0.68
LIMS1-204ENST00000409441 GGACTQ9BVM4 153 aa10.77□□□□□ -0.68
LIMS1-204ENST00000409441 MTORP42345 2549 aa10.77□□□□□ -0.68
LIMS1-204ENST00000409441 NAV3Q8IVL0 2385 aa10.77□□□□□ -0.69
LIMS1-204ENST00000409441 LOC102723971A0A1B0GUV8 181 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 C15orf61A6NNL5 157 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 C15orf62A8K5M9 175 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 CRLF1O75462 422 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 HRASP01112 189 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 SRP19P09132 144 aaKnown RBP10.76□□□□□ -0.69
LIMS1-204ENST00000409441 REG1BP48304 166 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 OR2B8PP59922 312 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 ICAM4Q14773 271 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 DEFB112Q30KQ8 113 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 RCC1LQ96I51 464 aaKnown RBP10.76□□□□□ -0.69
LIMS1-204ENST00000409441 RARRES2Q99969 163 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 AIFM2Q9BRQ8 373 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 MEGF9Q9H1U4 602 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 FOXA2Q9Y261 457 aaPredicted RBP10.76□□□□□ -0.69
LIMS1-204ENST00000409441 TET2Q6N021 2002 aaPredicted RBP10.76□□□□□ -0.69
LIMS1-204ENST00000409441 MXRA5Q9NR99 2828 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 OOSP1A8MZH6 123 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 C17orf112F2Z3M2 114 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 IFNA1P01562 189 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 FBP1P09467 338 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 MDKP21741 143 aaPredicted RBP10.76□□□□□ -0.69
LIMS1-204ENST00000409441 FGF7P21781 194 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 VDAC2P45880 294 aaPredicted RBP10.76□□□□□ -0.69
LIMS1-204ENST00000409441 SCGB2A2Q13296 93 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 AWAT1Q58HT5 328 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 FAM71F2Q6NXP2 309 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 ZNF833PQ6ZTB9 187 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 SSX9Q7RTT3 188 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 TGIF2LXQ8IUE1 241 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 ZNF383Q8NA42 475 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 TUBA4BQ9H853 241 aa10.76□□□□□ -0.69
LIMS1-204ENST00000409441 TEP1Q99973 2627 aaKnown RBP10.75□□□□□ -0.69
LIMS1-204ENST00000409441 MDFIC2A0A1B0GVS7 189 aa10.75□□□□□ -0.69
LIMS1-204ENST00000409441 H7C2Y5 167 aa10.75□□□□□ -0.69
LIMS1-204ENST00000409441 NDUFS6O75380 124 aaKnown RBP10.75□□□□□ -0.69
LIMS1-204ENST00000409441 OR13C7P0DN81 318 aa10.75□□□□□ -0.69
LIMS1-204ENST00000409441 ZNF726P1Q15940 193 aa10.75□□□□□ -0.69
LIMS1-204ENST00000409441 HAGHQ16775 308 aa10.75□□□□□ -0.69
LIMS1-204ENST00000409441 RTL8BQ17RB0 113 aa10.75□□□□□ -0.69
LIMS1-204ENST00000409441 CCDC144NLQ6NUI1 221 aa10.75□□□□□ -0.69
LIMS1-204ENST00000409441 C15orf54Q8N8G6 183 aa10.75□□□□□ -0.69
LIMS1-204ENST00000409441 ZNF709Q8N972 641 aa10.75□□□□□ -0.69
LIMS1-204ENST00000409441 ZNF48Q96MX3 618 aaPredicted RBP10.75□□□□□ -0.69
LIMS1-204ENST00000409441 VSIRQ9H7M9 311 aa10.75□□□□□ -0.69
LIMS1-204ENST00000409441 TCF19Q9Y242 345 aa10.75□□□□□ -0.69
LIMS1-204ENST00000409441 NSD1Q96L73 2696 aaPredicted RBP10.74□□□□□ -0.69
LIMS1-204ENST00000409441 IGHV1-3A0A0C4DH29 117 aa10.74□□□□□ -0.69
LIMS1-204ENST00000409441 C7orf77A4D0Y5 90 aa10.74□□□□□ -0.69
LIMS1-204ENST00000409441 M0R036 132 aa10.74□□□□□ -0.69
LIMS1-204ENST00000409441 MPDU1O75352 247 aa10.74□□□□□ -0.69
LIMS1-204ENST00000409441 TAGLN2P37802 199 aaKnown RBP10.74□□□□□ -0.69
LIMS1-204ENST00000409441 RAB13P51153 203 aa10.74□□□□□ -0.69
LIMS1-204ENST00000409441 RAB11AP62491 216 aa10.74□□□□□ -0.69
LIMS1-204ENST00000409441 FLI1Q01543 452 aaPredicted RBP10.74□□□□□ -0.69
LIMS1-204ENST00000409441 OR4A47Q6IF82 309 aa10.74□□□□□ -0.69
LIMS1-204ENST00000409441 MOB3BQ86TA1 216 aa10.74□□□□□ -0.69
LIMS1-204ENST00000409441 RHOVQ96L33 236 aa10.74□□□□□ -0.69
LIMS1-204ENST00000409441 P2RX4Q99571 388 aa10.74□□□□□ -0.69
LIMS1-204ENST00000409441 PRDM13Q9H4Q3 707 aa10.74□□□□□ -0.69
LIMS1-204ENST00000409441 RPS10P5Q9NQ39 176 aa10.74□□□□□ -0.69
LIMS1-204ENST00000409441 HEYLQ9NQ87 328 aaPredicted RBP10.74□□□□□ -0.69
LIMS1-204ENST00000409441 SLC35D1Q9NTN3 355 aa10.74□□□□□ -0.69
LIMS1-204ENST00000409441 TMEM14BQ9NUH8 114 aa10.74□□□□□ -0.69
LIMS1-204ENST00000409441 WDR83OSQ9Y284 106 aa10.74□□□□□ -0.69
LIMS1-204ENST00000409441 FN1P02751 2386 aaKnown RBP10.74□□□□□ -0.69
LIMS1-204ENST00000409441 CTXND1A0A1B0GTU2 59 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms