RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 PLEKHA3Q9HB20 300 aa12.42□□□□□ -0.42
HMGA1-204ENST00000401473 C5orf51A6NDU8 294 aa12.41□□□□□ -0.42
HMGA1-204ENST00000401473 INS-IGF2F8WCM5 200 aa12.41□□□□□ -0.42
HMGA1-204ENST00000401473 H2BFSP57053 126 aa12.41□□□□□ -0.42
HMGA1-204ENST00000401473 DEFA5Q01523 94 aa12.41□□□□□ -0.42
HMGA1-204ENST00000401473 IL15RAQ13261 267 aa12.41□□□□□ -0.42
HMGA1-204ENST00000401473 OR2C3Q8N628 320 aa12.41□□□□□ -0.42
HMGA1-204ENST00000401473 ZBTB8BQ8NAP8 495 aaPredicted RBP12.41□□□□□ -0.42
HMGA1-204ENST00000401473 MAGT1Q9H0U3 335 aa12.41□□□□□ -0.42
HMGA1-204ENST00000401473 RBKSQ9H477 322 aa12.41□□□□□ -0.42
HMGA1-204ENST00000401473 ZNF355PQ9NSJ1 428 aa12.41□□□□□ -0.42
HMGA1-204ENST00000401473 TRBV9A0A0B4J1U6 114 aa12.4□□□□□ -0.42
HMGA1-204ENST00000401473 GOSR2O14653 212 aa12.4□□□□□ -0.42
HMGA1-204ENST00000401473 CXCL3P19876 107 aa12.4□□□□□ -0.42
HMGA1-204ENST00000401473 HSD17B13Q7Z5P4 300 aaPredicted RBP12.4□□□□□ -0.42
HMGA1-204ENST00000401473 COMMD1Q8N668 190 aa12.4□□□□□ -0.42
HMGA1-204ENST00000401473 OR4X2Q8NGF9 303 aa12.4□□□□□ -0.42
HMGA1-204ENST00000401473 P2RX4Q99571 388 aa12.4□□□□□ -0.42
HMGA1-204ENST00000401473 BRI3O95415 125 aa12.4□□□□□ -0.42
HMGA1-204ENST00000401473 TMEM65Q6PI78 240 aa12.4□□□□□ -0.42
HMGA1-204ENST00000401473 C18orf65Q6ZTR6 163 aa12.4□□□□□ -0.42
HMGA1-204ENST00000401473 MYOZ3Q8TDC0 251 aa12.4□□□□□ -0.42
HMGA1-204ENST00000401473 C2orf50Q96LR7 162 aa12.4□□□□□ -0.42
HMGA1-204ENST00000401473 CEBPZOSA8MTT3 80 aa12.39□□□□□ -0.43
HMGA1-204ENST00000401473 ADARB2-AS1A8MUL3 147 aa12.39□□□□□ -0.43
HMGA1-204ENST00000401473 FAM90A26D6RGX4 464 aa12.39□□□□□ -0.43
HMGA1-204ENST00000401473 MBPP02686 304 aaPredicted RBP12.39□□□□□ -0.43
HMGA1-204ENST00000401473 DEFA4P12838 97 aa12.39□□□□□ -0.43
HMGA1-204ENST00000401473 NKX2-1P43699 371 aaPredicted RBP12.39□□□□□ -0.43
HMGA1-204ENST00000401473 HOXA1P49639 335 aaPredicted RBP12.39□□□□□ -0.43
HMGA1-204ENST00000401473 POLR2GP62487 172 aaKnown RBP eCLIP12.39□□□□□ -0.43
HMGA1-204ENST00000401473 ERHP84090 104 aaKnown RBP12.39□□□□□ -0.43
HMGA1-204ENST00000401473 KLK9Q2XQG4 91 aa12.39□□□□□ -0.43
HMGA1-204ENST00000401473 GSG1LQ6UXU4 331 aa12.39□□□□□ -0.43
HMGA1-204ENST00000401473 KLK9Q9UKQ9 250 aa12.39□□□□□ -0.43
HMGA1-204ENST00000401473 F11RQ9Y624 299 aaKnown RBP12.39□□□□□ -0.43
HMGA1-204ENST00000401473 NOTCH3Q9UM47 2321 aa12.38□□□□□ -0.43
HMGA1-204ENST00000401473 IGLV11-55A0A075B6I3 123 aa12.38□□□□□ -0.43
HMGA1-204ENST00000401473 TCRBV4S1A1TA0A5B7 111 aa12.38□□□□□ -0.43
HMGA1-204ENST00000401473 H3BUA1 57 aa12.38□□□□□ -0.43
HMGA1-204ENST00000401473 TRGV3P03979 118 aa12.38□□□□□ -0.43
HMGA1-204ENST00000401473 TPPP2P59282 170 aa12.38□□□□□ -0.43
HMGA1-204ENST00000401473 BSXQ3C1V8 233 aa12.38□□□□□ -0.43
HMGA1-204ENST00000401473 ZNF491Q8N8L2 437 aa12.38□□□□□ -0.43
HMGA1-204ENST00000401473 OR11H7Q8NGC8 314 aa12.38□□□□□ -0.43
HMGA1-204ENST00000401473 DTD1Q8TEA8 209 aa12.38□□□□□ -0.43
HMGA1-204ENST00000401473 TMEM170AQ8WVE7 144 aa12.38□□□□□ -0.43
HMGA1-204ENST00000401473 SLA2Q9H6Q3 261 aa12.38□□□□□ -0.43
HMGA1-204ENST00000401473 HEYLQ9NQ87 328 aaPredicted RBP12.38□□□□□ -0.43
HMGA1-204ENST00000401473 CACFD1Q9UGQ2 172 aa12.38□□□□□ -0.43
HMGA1-204ENST00000401473 SYNGR2O43760 224 aa12.38□□□□□ -0.43
HMGA1-204ENST00000401473 OR2J3O76001 311 aa12.38□□□□□ -0.43
HMGA1-204ENST00000401473 RNASE2P10153 161 aaKnown RBP12.38□□□□□ -0.43
HMGA1-204ENST00000401473 FCN2Q15485 313 aa12.38□□□□□ -0.43
HMGA1-204ENST00000401473 MGAT4CQ9UBM8 478 aa12.38□□□□□ -0.43
HMGA1-204ENST00000401473 CMYA5Q8N3K9 4069 aa12.37□□□□□ -0.43
HMGA1-204ENST00000401473 WRBO00258 174 aa12.37□□□□□ -0.43
HMGA1-204ENST00000401473 NDUFB8O95169 186 aa12.37□□□□□ -0.43
HMGA1-204ENST00000401473 TMEM50AO95807 157 aa12.37□□□□□ -0.43
HMGA1-204ENST00000401473 SCGB1D2O95969 90 aa12.37□□□□□ -0.43
HMGA1-204ENST00000401473 IAPPP10997 89 aa12.37□□□□□ -0.43
HMGA1-204ENST00000401473 SNCAP37840 140 aa12.37□□□□□ -0.43
HMGA1-204ENST00000401473 RHOGP84095 191 aa12.37□□□□□ -0.43
HMGA1-204ENST00000401473 SLC25A24Q6NUK1 477 aa12.37□□□□□ -0.43
HMGA1-204ENST00000401473 SHISA2Q6UWI4 295 aa12.37□□□□□ -0.43
HMGA1-204ENST00000401473 ZNF114Q8NC26 417 aa12.37□□□□□ -0.43
HMGA1-204ENST00000401473 OR1P1Q8NH06 330 aa12.37□□□□□ -0.43
HMGA1-204ENST00000401473 MED28Q9H204 178 aa12.37□□□□□ -0.43
HMGA1-204ENST00000401473 ENY2Q9NPA8 101 aa12.37□□□□□ -0.43
HMGA1-204ENST00000401473 TSSC4Q9Y5U2 329 aaPredicted RBP12.37□□□□□ -0.43
HMGA1-204ENST00000401473 A0A1W2PRX2 142 aa12.36□□□□□ -0.43
HMGA1-204ENST00000401473 CDX1P47902 265 aaPredicted RBP12.36□□□□□ -0.43
HMGA1-204ENST00000401473 Q6ZNX1 250 aa12.36□□□□□ -0.43
HMGA1-204ENST00000401473 UBE2E2Q96LR5 201 aa12.36□□□□□ -0.43
HMGA1-204ENST00000401473 HIPK2Q9H2X6 1198 aa12.36□□□□□ -0.43
HMGA1-204ENST00000401473 GNB4Q9HAV0 340 aa12.36□□□□□ -0.43
HMGA1-204ENST00000401473 ZFP57Q9NU63 452 aa12.36□□□□□ -0.43
HMGA1-204ENST00000401473 RCL1Q9Y2P8 373 aaKnown RBP12.36□□□□□ -0.43
HMGA1-204ENST00000401473 IGHV3-11P01762 117 aa12.36□□□□□ -0.43
HMGA1-204ENST00000401473 PAX9P55771 341 aa12.36□□□□□ -0.43
HMGA1-204ENST00000401473 RRAS2P62070 204 aaPredicted RBP12.36□□□□□ -0.43
HMGA1-204ENST00000401473 RPL23AP62750 156 aaKnown RBP12.36□□□□□ -0.43
HMGA1-204ENST00000401473 C15orf32Q32M92 178 aa12.36□□□□□ -0.43
HMGA1-204ENST00000401473 KHDC1LQ5JSQ8 128 aa12.36□□□□□ -0.43
HMGA1-204ENST00000401473 PVRIGQ6DKI7 326 aa12.36□□□□□ -0.43
HMGA1-204ENST00000401473 NECAP1Q8NC96 275 aa12.36□□□□□ -0.43
HMGA1-204ENST00000401473 OR5B12Q96R08 314 aa12.36□□□□□ -0.43
HMGA1-204ENST00000401473 FBXL7Q9UJT9 491 aa12.36□□□□□ -0.43
HMGA1-204ENST00000401473 MED6O75586 246 aa12.35□□□□□ -0.43
HMGA1-204ENST00000401473 HTR2BP41595 481 aa12.35□□□□□ -0.43
HMGA1-204ENST00000401473 RAB32Q13637 225 aa12.35□□□□□ -0.43
HMGA1-204ENST00000401473 MLANAQ16655 118 aa12.35□□□□□ -0.43
HMGA1-204ENST00000401473 NSUN5P1Q3KNT7 163 aa12.35□□□□□ -0.43
HMGA1-204ENST00000401473 MRPL41Q8IXM3 137 aaKnown RBP12.35□□□□□ -0.43
HMGA1-204ENST00000401473 NMES1Q9C002 83 aa12.35□□□□□ -0.43
HMGA1-204ENST00000401473 S4R3C0 116 aa12.35□□□□□ -0.43
HMGA1-204ENST00000401473 MGAM2Q2M2H8 2515 aa12.34□□□□□ -0.43
HMGA1-204ENST00000401473 K7EPK0 472 aa12.34□□□□□ -0.43
HMGA1-204ENST00000401473 SSSCA1O60232 199 aa12.34□□□□□ -0.43
HMGA1-204ENST00000401473 SLC24A4Q8NFF2 622 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms