RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 CD69Q07108 199 aa20.25■□□□□ 0.83
SHOX2-201ENST00000389589 C10orf55Q5SWW7 151 aa20.25■□□□□ 0.83
SHOX2-201ENST00000389589 MIC13Q5XKP0 118 aa20.25■□□□□ 0.83
SHOX2-201ENST00000389589 VMO1Q7Z5L0 202 aa20.25■□□□□ 0.83
SHOX2-201ENST00000389589 RNASEH2CQ8TDP1 164 aaKnown RBP20.25■□□□□ 0.83
SHOX2-201ENST00000389589 BPESC1Q9GZL8 116 aa20.25■□□□□ 0.83
SHOX2-201ENST00000389589 TSPAN4O14817 238 aa20.24■□□□□ 0.83
SHOX2-201ENST00000389589 TIMM23O14925 209 aa20.24■□□□□ 0.83
SHOX2-201ENST00000389589 KLRD1Q13241 179 aa20.24■□□□□ 0.83
SHOX2-201ENST00000389589 LDLRAD2Q5SZI1 272 aa20.24■□□□□ 0.83
SHOX2-201ENST00000389589 METTL1Q9UBP6 276 aaKnown RBP20.24■□□□□ 0.83
SHOX2-201ENST00000389589 DOPEY1Q5JWR5 2465 aa20.24■□□□□ 0.83
SHOX2-201ENST00000389589 A0A1W2PPV4 95 aa20.23■□□□□ 0.83
SHOX2-201ENST00000389589 IGHV4-39P01824 125 aa20.23■□□□□ 0.83
SHOX2-201ENST00000389589 CNTFRP26992 372 aa20.23■□□□□ 0.83
SHOX2-201ENST00000389589 RPL27AP46776 148 aaKnown RBP20.23■□□□□ 0.83
SHOX2-201ENST00000389589 PAX2Q02962 417 aa20.23■□□□□ 0.83
SHOX2-201ENST00000389589 TMEM249Q2WGJ8 235 aa20.23■□□□□ 0.83
SHOX2-201ENST00000389589 PPP1R27Q86WC6 154 aa20.23■□□□□ 0.83
SHOX2-201ENST00000389589 MANBALQ9NQG1 85 aa20.23■□□□□ 0.83
SHOX2-201ENST00000389589 IGHV2-70DA0A0C4DH43 119 aa20.23■□□□□ 0.83
SHOX2-201ENST00000389589 B2MP61769 119 aa20.23■□□□□ 0.83
SHOX2-201ENST00000389589 LMO4P61968 165 aa20.23■□□□□ 0.83
SHOX2-201ENST00000389589 HABP2Q14520 560 aaPredicted RBP20.23■□□□□ 0.83
SHOX2-201ENST00000389589 CYB561D1Q8N8Q1 229 aa20.23■□□□□ 0.83
SHOX2-201ENST00000389589 CCL19Q99731 98 aa20.23■□□□□ 0.83
SHOX2-201ENST00000389589 VENTXO95231 258 aa20.22■□□□□ 0.83
SHOX2-201ENST00000389589 LCN2P80188 198 aa20.22■□□□□ 0.83
SHOX2-201ENST00000389589 GAMTQ14353 236 aa20.22■□□□□ 0.83
SHOX2-201ENST00000389589 TNXAQ16473 311 aa20.22■□□□□ 0.83
SHOX2-201ENST00000389589 SSMEM1Q8WWF3 244 aa20.22■□□□□ 0.83
SHOX2-201ENST00000389589 SIRPDQ9H106 197 aa20.22■□□□□ 0.83
SHOX2-201ENST00000389589 OOSP1A8MZH6 123 aa20.22■□□□□ 0.83
SHOX2-201ENST00000389589 HMGB3O15347 200 aaKnown RBP20.22■□□□□ 0.83
SHOX2-201ENST00000389589 COMPP49747 757 aaPredicted RBP20.22■□□□□ 0.83
SHOX2-201ENST00000389589 TMEM88Q6PEY1 159 aa20.22■□□□□ 0.83
SHOX2-201ENST00000389589 STPG3Q8N7X2 389 aa20.22■□□□□ 0.83
SHOX2-201ENST00000389589 BBC3Q96PG8 261 aaPredicted RBP20.22■□□□□ 0.83
SHOX2-201ENST00000389589 HILPDAQ9Y5L2 63 aa20.22■□□□□ 0.83
SHOX2-201ENST00000389589 M0R036 132 aa20.21■□□□□ 0.83
SHOX2-201ENST00000389589 PRB1P04280 392 aa20.21■□□□□ 0.83
SHOX2-201ENST00000389589 FBP1P09467 338 aa20.21■□□□□ 0.83
SHOX2-201ENST00000389589 PSMB3P49720 205 aa20.21■□□□□ 0.83
SHOX2-201ENST00000389589 AWAT1Q58HT5 328 aa20.21■□□□□ 0.83
SHOX2-201ENST00000389589 GCSAMLQ5JQS6 135 aa20.21■□□□□ 0.83
SHOX2-201ENST00000389589 MINOS1Q5TGZ0 78 aa20.21■□□□□ 0.83
SHOX2-201ENST00000389589 CCDC144NLQ6NUI1 221 aa20.21■□□□□ 0.83
SHOX2-201ENST00000389589 SLC16A13Q7RTY0 426 aa20.21■□□□□ 0.83
SHOX2-201ENST00000389589 SLC35E3Q7Z769 313 aa20.21■□□□□ 0.83
SHOX2-201ENST00000389589 CFHR4Q92496 578 aa20.21■□□□□ 0.83
SHOX2-201ENST00000389589 SLC35E1Q96K37 410 aa20.21■□□□□ 0.83
SHOX2-201ENST00000389589 MINOS1-NBL1R4GNA1 71 aa20.21■□□□□ 0.83
SHOX2-201ENST00000389589 PLXNB1O43157 2135 aa20.2■□□□□ 0.82
SHOX2-201ENST00000389589 NDUFS6O75380 124 aaKnown RBP20.2■□□□□ 0.82
SHOX2-201ENST00000389589 EIF3GO75821 320 aaKnown RBP eCLIP20.2■□□□□ 0.82
SHOX2-201ENST00000389589 PRR20EP86478 221 aa20.2■□□□□ 0.82
SHOX2-201ENST00000389589 PRR20CP86479 221 aa20.2■□□□□ 0.82
SHOX2-201ENST00000389589 PRR20DP86480 221 aa20.2■□□□□ 0.82
SHOX2-201ENST00000389589 PRR20BP86481 221 aa20.2■□□□□ 0.82
SHOX2-201ENST00000389589 PRR20AP86496 221 aa20.2■□□□□ 0.82
SHOX2-201ENST00000389589 CBLN2Q8IUK8 224 aa20.2■□□□□ 0.82
SHOX2-201ENST00000389589 HOXB4P17483 251 aaPredicted RBP20.2■□□□□ 0.82
SHOX2-201ENST00000389589 CEBPGP53567 150 aa20.2■□□□□ 0.82
SHOX2-201ENST00000389589 RHEBQ15382 184 aa20.2■□□□□ 0.82
SHOX2-201ENST00000389589 LHFPL4Q7Z7J7 247 aa20.2■□□□□ 0.82
SHOX2-201ENST00000389589 ZNF114Q8NC26 417 aa20.2■□□□□ 0.82
SHOX2-201ENST00000389589 TMPRSS5Q9H3S3 457 aa20.2■□□□□ 0.82
SHOX2-201ENST00000389589 SLC45A2Q9UMX9 530 aa20.2■□□□□ 0.82
SHOX2-201ENST00000389589 IGLC7A0M8Q6 106 aa20.19■□□□□ 0.82
SHOX2-201ENST00000389589 FOXH1O75593 365 aa20.19■□□□□ 0.82
SHOX2-201ENST00000389589 NAV3Q8IVL0 2385 aa20.19■□□□□ 0.82
SHOX2-201ENST00000389589 RNF224P0DH78 156 aa20.18■□□□□ 0.82
SHOX2-201ENST00000389589 MEF2BQ02080 365 aaPredicted RBP20.18■□□□□ 0.82
SHOX2-201ENST00000389589 FBXL15Q9H469 300 aa20.18■□□□□ 0.82
SHOX2-201ENST00000389589 RPS10P5Q9NQ39 176 aa20.18■□□□□ 0.82
SHOX2-201ENST00000389589 PUS1Q9Y606 427 aaKnown RBP eCLIP20.18■□□□□ 0.82
SHOX2-201ENST00000389589 C7orf77A4D0Y5 90 aa20.18■□□□□ 0.82
SHOX2-201ENST00000389589 MOSP00540 346 aa20.18■□□□□ 0.82
SHOX2-201ENST00000389589 LGALS4P56470 323 aa20.18■□□□□ 0.82
SHOX2-201ENST00000389589 ZNF843Q8N446 348 aa20.18■□□□□ 0.82
SHOX2-201ENST00000389589 SMCO4Q9NRQ5 59 aa20.18■□□□□ 0.82
SHOX2-201ENST00000389589 AKAP6Q13023 2319 aa20.18■□□□□ 0.82
SHOX2-201ENST00000389589 H3BQ15 152 aa20.17■□□□□ 0.82
SHOX2-201ENST00000389589 SNRNP70P08621 437 aaKnown RBP20.17■□□□□ 0.82
SHOX2-201ENST00000389589 DEFA4P12838 97 aa20.17■□□□□ 0.82
SHOX2-201ENST00000389589 RHOBP62745 196 aa20.17■□□□□ 0.82
SHOX2-201ENST00000389589 PLGLAQ15195 96 aa20.17■□□□□ 0.82
SHOX2-201ENST00000389589 AKIRIN2Q53H80 203 aa20.17■□□□□ 0.82
SHOX2-201ENST00000389589 PVRIGQ6DKI7 326 aa20.17■□□□□ 0.82
SHOX2-201ENST00000389589 NIPSNAP3BQ9BS92 247 aa20.17■□□□□ 0.82
SHOX2-201ENST00000389589 TOX4O94842 621 aa20.17■□□□□ 0.82
SHOX2-201ENST00000389589 MLANAQ16655 118 aa20.17■□□□□ 0.82
SHOX2-201ENST00000389589 IQCF2Q8IXL9 164 aa20.17■□□□□ 0.82
SHOX2-201ENST00000389589 PIMREGQ9BSJ6 248 aa20.17■□□□□ 0.82
SHOX2-201ENST00000389589 WNK2Q9Y3S1 2297 aa20.16■□□□□ 0.82
SHOX2-201ENST00000389589 IGKV1OR2-108A0A075B7D4 117 aa20.16■□□□□ 0.82
SHOX2-201ENST00000389589 NBR2O15453 112 aa20.16■□□□□ 0.82
SHOX2-201ENST00000389589 LINC00869P0C866 280 aa20.16■□□□□ 0.82
SHOX2-201ENST00000389589 STAG3L2P0CL84 134 aa20.16■□□□□ 0.82
SHOX2-201ENST00000389589 STAG3L3P0CL85 134 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms