RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 SMCO3A2RU48 225 aa11.01□□□□□ -0.65
PTPRF-202ENST00000372405 OOSP1A8MZH6 123 aa11.01□□□□□ -0.65
PTPRF-202ENST00000372405 KRBOX1C9JBD0 128 aa11.01□□□□□ -0.65
PTPRF-202ENST00000372405 C9JQL5 133 aa11.01□□□□□ -0.65
PTPRF-202ENST00000372405 MOSP00540 346 aa11.01□□□□□ -0.65
PTPRF-202ENST00000372405 SAA4P35542 130 aa11.01□□□□□ -0.65
PTPRF-202ENST00000372405 CHRNA7P36544 502 aa11.01□□□□□ -0.65
PTPRF-202ENST00000372405 MMDQ15546 238 aa11.01□□□□□ -0.65
PTPRF-202ENST00000372405 TNXAQ16473 311 aa11.01□□□□□ -0.65
PTPRF-202ENST00000372405 DPPA3Q6W0C5 159 aa11.01□□□□□ -0.65
PTPRF-202ENST00000372405 CCDC28AQ8IWP9 274 aa11.01□□□□□ -0.65
PTPRF-202ENST00000372405 MGST2Q99735 147 aa11.01□□□□□ -0.65
PTPRF-202ENST00000372405 TBL2Q9Y4P3 447 aaKnown RBP11.01□□□□□ -0.65
PTPRF-202ENST00000372405 A0A096LNT2 108 aa11□□□□□ -0.65
PTPRF-202ENST00000372405 NDUFA3O95167 84 aa11□□□□□ -0.65
PTPRF-202ENST00000372405 REG1AP05451 166 aa11□□□□□ -0.65
PTPRF-202ENST00000372405 CD5P06127 495 aa11□□□□□ -0.65
PTPRF-202ENST00000372405 H2AFB1P0C5Y9 115 aa11□□□□□ -0.65
PTPRF-202ENST00000372405 DSCR9P59020 149 aa11□□□□□ -0.65
PTPRF-202ENST00000372405 RAB2AP61019 212 aa11□□□□□ -0.65
PTPRF-202ENST00000372405 ERHP84090 104 aaKnown RBP11□□□□□ -0.65
PTPRF-202ENST00000372405 MLANAQ16655 118 aa11□□□□□ -0.65
PTPRF-202ENST00000372405 CLEC12BQ2HXU8 276 aa11□□□□□ -0.65
PTPRF-202ENST00000372405 TMEM41BQ5BJD5 291 aa11□□□□□ -0.65
PTPRF-202ENST00000372405 CCDC144NLQ6NUI1 221 aa11□□□□□ -0.65
PTPRF-202ENST00000372405 RPP25LQ8N5L8 163 aaKnown RBP11□□□□□ -0.65
PTPRF-202ENST00000372405 Q8N6K4 173 aa11□□□□□ -0.65
PTPRF-202ENST00000372405 NPBQ8NG41 125 aa11□□□□□ -0.65
PTPRF-202ENST00000372405 RCC1LQ96I51 464 aaKnown RBP11□□□□□ -0.65
PTPRF-202ENST00000372405 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11□□□□□ -0.652e-12■■□□□ 13.4
PTPRF-202ENST00000372405 TEX22C9J3V5 150 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 NBR2O15453 112 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 EIF3GO75821 320 aaKnown RBP eCLIP10.99□□□□□ -0.65
PTPRF-202ENST00000372405 OR13C7P0DN81 318 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 AREGP15514 252 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 ADCYAP1P18509 176 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 MAS1LP35410 378 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 RPL27AP46776 148 aaKnown RBP10.99□□□□□ -0.65
PTPRF-202ENST00000372405 ATP5IP56385 69 aaPredicted RBP10.99□□□□□ -0.65
PTPRF-202ENST00000372405 GNB1P62873 340 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 EBI3Q14213 229 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 P2RX4Q99571 388 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 TMEM218A2RU14 115 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 J3QKU1 62 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 APELAP0DMC3 54 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 FFAR4Q5NUL3 377 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 C19orf35Q6ZS72 473 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 COMMD1Q8N668 190 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 SFT2D1Q8WV19 159 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 MALSU1Q96EH3 234 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 NARS2Q96I59 477 aaKnown RBP10.99□□□□□ -0.65
PTPRF-202ENST00000372405 GGTLC1Q9BX51 225 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 NPVFQ9HCQ7 196 aa10.99□□□□□ -0.65
PTPRF-202ENST00000372405 NAV2Q8IVL1 2488 aa10.98□□□□□ -0.65
PTPRF-202ENST00000372405 NPFFO15130 113 aa10.98□□□□□ -0.65
PTPRF-202ENST00000372405 ACTL6BO94805 426 aa10.98□□□□□ -0.65
PTPRF-202ENST00000372405 DEFA4P12838 97 aa10.98□□□□□ -0.65
PTPRF-202ENST00000372405 MFAP2P55001 183 aa10.98□□□□□ -0.65
PTPRF-202ENST00000372405 HES1Q14469 280 aa10.98□□□□□ -0.65
PTPRF-202ENST00000372405 OR2T10Q8NGZ9 312 aa10.98□□□□□ -0.65
PTPRF-202ENST00000372405 TREM1Q9NP99 234 aa10.98□□□□□ -0.65
PTPRF-202ENST00000372405 ABCA1O95477 2261 aa10.98□□□□□ -0.65
PTPRF-202ENST00000372405 ZANQ9Y493 2812 aa10.98□□□□□ -0.65
PTPRF-202ENST00000372405 IGKV1OR2-108A0A075B7D4 117 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 IGHV3OR16-10A0A075B7F0 116 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 TRAV1-1A0A0B4J248 108 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 FNDC10F2Z333 226 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 MPDU1O75352 247 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 MSMBP08118 114 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 CD69Q07108 199 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 GAMTQ14353 236 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 PLGLAQ15195 96 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 GUK1Q16774 197 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 GCSAMLQ5JQS6 135 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 FAM120AOSQ5T036 256 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 RUSC1-AS1Q66K80 236 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 PVRIGQ6DKI7 326 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 MBD3L1Q8WWY6 194 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 SRSF12Q8WXF0 261 aaKnown RBP10.97□□□□□ -0.65
PTPRF-202ENST00000372405 FNDC4Q9H6D8 234 aaPredicted RBP10.97□□□□□ -0.65
PTPRF-202ENST00000372405 YIF1AO95070 293 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 SLC25A16P16260 332 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 C5orf64Q2M2E5 130 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 HIST2H2BCQ6DN03 193 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 ZNF709Q8N972 641 aa10.97□□□□□ -0.65
PTPRF-202ENST00000372405 C17orf112F2Z3M2 114 aa10.96□□□□□ -0.65
PTPRF-202ENST00000372405 SCO1O75880 301 aa10.96□□□□□ -0.65
PTPRF-202ENST00000372405 OPRK1P41145 380 aa10.96□□□□□ -0.65
PTPRF-202ENST00000372405 FGF8P55075 233 aaPredicted RBP10.96□□□□□ -0.65
PTPRF-202ENST00000372405 MIC13Q5XKP0 118 aa10.96□□□□□ -0.65
PTPRF-202ENST00000372405 TEPPQ6URK8 271 aa10.96□□□□□ -0.65
PTPRF-202ENST00000372405 LCN15Q6UWW0 184 aa10.96□□□□□ -0.65
PTPRF-202ENST00000372405 ZNF114Q8NC26 417 aa10.96□□□□□ -0.65
PTPRF-202ENST00000372405 LFNGQ8NES3 379 aa10.96□□□□□ -0.65
PTPRF-202ENST00000372405 PSMG3-AS1Q96PY0 264 aa10.96□□□□□ -0.65
PTPRF-202ENST00000372405 RARRES2Q99969 163 aa10.96□□□□□ -0.65
PTPRF-202ENST00000372405 DMRT1Q9Y5R6 373 aa10.96□□□□□ -0.65
PTPRF-202ENST00000372405 BTBD17A6NE02 478 aa10.96□□□□□ -0.66
PTPRF-202ENST00000372405 C10orf91Q5T1B1 145 aa10.96□□□□□ -0.66
PTPRF-202ENST00000372405 SLC16A13Q7RTY0 426 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms