RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 PDCD11Q14690 1871 aaKnown RBP8.27□□□□□ -1.08
CHD3-202ENST00000358181 CENPVL1A0A0U1RR11 272 aa8.27□□□□□ -1.08
CHD3-202ENST00000358181 CXorf51AA0A1B0GTR3 108 aa8.27□□□□□ -1.08
CHD3-202ENST00000358181 MSRB3Q8IXL7 192 aa8.27□□□□□ -1.08
CHD3-202ENST00000358181 SLC22A18ASQ8N1D0 253 aa8.27□□□□□ -1.08
CHD3-202ENST00000358181 ABCA3Q99758 1704 aa8.27□□□□□ -1.08
CHD3-202ENST00000358181 C5orf30Q96GV9 206 aa8.27□□□□□ -1.09
CHD3-202ENST00000358181 MRM2Q9UI43 246 aaKnown RBP8.27□□□□□ -1.09
CHD3-202ENST00000358181 RP1L1Q8IWN7 2480 aaPredicted RBP8.27□□□□□ -1.09
CHD3-202ENST00000358181 ODAMA1E959 279 aa8.27□□□□□ -1.09
CHD3-202ENST00000358181 SPTBP11277 2137 aa8.27□□□□□ -1.09
CHD3-202ENST00000358181 CLPSL2Q6UWE3 100 aa8.27□□□□□ -1.09
CHD3-202ENST00000358181 COX14Q96I36 57 aa8.27□□□□□ -1.09
CHD3-202ENST00000358181 C14orf144Q96I85 54 aa8.27□□□□□ -1.09
CHD3-202ENST00000358181 ELOVL5Q9NYP7 299 aa8.27□□□□□ -1.09
CHD3-202ENST00000358181 MT-ND6P03923 174 aa8.27□□□□□ -1.09
CHD3-202ENST00000358181 PRTN3P24158 256 aa8.27□□□□□ -1.09
CHD3-202ENST00000358181 P2RY6Q15077 328 aa8.27□□□□□ -1.09
CHD3-202ENST00000358181 TAL2Q16559 108 aa8.27□□□□□ -1.09
CHD3-202ENST00000358181 CYP2G1PQ6ZSU1 146 aa8.27□□□□□ -1.09
CHD3-202ENST00000358181 C8orf88P0DMB2 117 aa8.27□□□□□ -1.09
CHD3-202ENST00000358181 PRR31Q5SQ13 230 aa8.27□□□□□ -1.09
CHD3-202ENST00000358181 DUSP15Q9H1R2 295 aaPredicted RBP8.27□□□□□ -1.09
CHD3-202ENST00000358181 TRAV13-1A0A0B4J241 112 aa8.27□□□□□ -1.09
CHD3-202ENST00000358181 LGALS1P09382 135 aaKnown RBP8.27□□□□□ -1.09
CHD3-202ENST00000358181 ASXL3Q9C0F0 2248 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 CRHP06850 196 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 KIAA0040Q15053 153 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 C8orf82Q6P1X6 216 aaPredicted RBP8.26□□□□□ -1.09
CHD3-202ENST00000358181 DAD1P61803 113 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 LSM6P62312 80 aaKnown RBP8.26□□□□□ -1.09
CHD3-202ENST00000358181 ZNF79Q15937 498 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 SSBP4Q9BWG4 385 aaPredicted RBP8.26□□□□□ -1.09
CHD3-202ENST00000358181 CHTOPQ9Y3Y2 248 aaKnown RBP8.26□□□□□ -1.09
CHD3-202ENST00000358181 SHANK3Q9BYB0 1731 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.26□□□□□ -1.09
CHD3-202ENST00000358181 TMEM8BA6NDV4 472 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 MBD3L4A6NDZ8 208 aaPredicted RBP8.26□□□□□ -1.09
CHD3-202ENST00000358181 MBD3L3A6NE82 208 aaPredicted RBP8.26□□□□□ -1.09
CHD3-202ENST00000358181 MBD3L5A6NJ08 208 aaPredicted RBP8.26□□□□□ -1.09
CHD3-202ENST00000358181 HOXB1P14653 301 aaPredicted RBP8.26□□□□□ -1.09
CHD3-202ENST00000358181 TBR1Q16650 682 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 MBD3L2Q8NHZ7 208 aaPredicted RBP8.26□□□□□ -1.09
CHD3-202ENST00000358181 ZNF257Q9Y2Q1 563 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 LAMB2P55268 1798 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 RREB1Q92766 1687 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 ARHGEF17Q96PE2 2063 aaPredicted RBP8.26□□□□□ -1.09
CHD3-202ENST00000358181 ERCC8Q13216 396 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 GAGE2AQ6NT46 116 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 FER1L6-AS1Q8NA97 138 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 SDHCQ99643 169 aaPredicted RBP8.26□□□□□ -1.09
CHD3-202ENST00000358181 PMCHL2Q9BQD1 86 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 SLC50A1Q9BRV3 221 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 DERL1Q9BUN8 251 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 UBR3Q6ZT12 1888 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 COL4A5P29400 1685 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 A0A1W2PQF6 199 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 F8VVB4 439 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 F8VWA3 439 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 SS18Q15532 418 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 ORMDL2Q53FV1 153 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 MTFP1Q9UDX5 166 aa8.26□□□□□ -1.09
CHD3-202ENST00000358181 ARFGEF1Q9Y6D6 1849 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 TEX48A0A1B0GUV7 120 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 C9orf40Q8IXQ3 194 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 DLL3Q9NYJ7 618 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 KLF12Q9Y4X4 402 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 ARID1AO14497 2285 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 TRGV11A0A075B6L2 103 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 FAM74A7A6NL05 159 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 GNG5P63218 68 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 BRD3OSQ6XYD6 125 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 Q9HAA7 133 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 IGLV3-16A0A075B6K0 115 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 A0A0J9YW62 118 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 MSGN1A6NI15 193 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 SLC25A16P16260 332 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 CD300EQ496F6 205 aaPredicted RBP8.25□□□□□ -1.09
CHD3-202ENST00000358181 TCTEX1D4Q5JR98 221 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 MTURNQ8N3F0 131 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 CKAP5Q14008 2032 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 CXCL3P19876 107 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 C1orf159Q96HA4 380 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 LINC00477Q96M19 166 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 FNDC4Q9H6D8 234 aaPredicted RBP8.25□□□□□ -1.09
CHD3-202ENST00000358181 LSM4Q9Y4Z0 139 aaKnown RBP8.25□□□□□ -1.09
CHD3-202ENST00000358181 ZNF250P15622 560 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 PPP1R32Q7Z5V6 425 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 ZIC4Q8N9L1 334 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 DMRT1Q9Y5R6 373 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 TRAV12-1A0A0B4J245 112 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 C7orf77A4D0Y5 90 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 TNFRSF6BO95407 300 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 IL17RELQ6ZVW7 336 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 DPM3Q9P2X0 92 aa8.25□□□□□ -1.09
CHD3-202ENST00000358181 SVILO95425 2214 aa8.24□□□□□ -1.09
CHD3-202ENST00000358181 DUSP14O95147 198 aaKnown RBP8.24□□□□□ -1.09
CHD3-202ENST00000358181 ATXN8Q156A1 80 aa8.24□□□□□ -1.09
CHD3-202ENST00000358181 CENPWQ5EE01 88 aa8.24□□□□□ -1.09
CHD3-202ENST00000358181 DOCK3Q8IZD9 2030 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms