RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 RBM7Q9Y580 266 aaKnown RBP1.82□□□□□ -2.12
VPS54-202ENST00000354504 TIMM9Q9Y5J7 89 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 A0A0U1RQK1 487 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 MED19A0JLT2 244 aaPredicted RBP1.82□□□□□ -2.12
VPS54-202ENST00000354504 IGLC7A0M8Q6 106 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 ZNF320A2RRD8 509 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 ZNF729A6NN14 1252 aaPredicted RBP1.82□□□□□ -2.12
VPS54-202ENST00000354504 ANKRD30BLA7E2S9 258 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 KRBOX1C9JBD0 128 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 RHODO00212 210 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 TSPAN4O14817 238 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 ST8SIA3O43173 380 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 IGLV2-11P01706 119 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 CD80P33681 288 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 CEACAM6P40199 344 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 ARHGDIBP52566 201 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 FXYD4P59646 89 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 UBE2KP61086 200 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 WT1-ASQ06250 92 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 BAXQ07812 192 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 SMCO1Q147U7 214 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 ELOBQ15370 118 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 CHRFAM7AQ494W8 412 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 GCSAMLQ5JQS6 135 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 FAM71F2Q6NXP2 309 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 HEPN1Q6WQI6 88 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 Q6ZSV7 163 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 OR5T2Q8NGG2 359 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 OR4P4Q8NGL7 312 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 IL1F10Q8WWZ1 152 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 RAB1CQ92928 201 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 ATP5SQ99766 215 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 BCL2L14Q9BZR8 327 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 CDH20Q9HBT6 801 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 ZC4H2Q9NQZ6 224 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 RPRMQ9NS64 109 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 UFSP2Q9NUQ7 469 aa1.82□□□□□ -2.12
VPS54-202ENST00000354504 CHD6Q8TD26 2715 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 ITPR3Q14573 2671 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 C5orf51A6NDU8 294 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 FNDC10F2Z333 226 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 TRAPPC2LH3BP13 241 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 TOR1AO14656 332 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 TSPAN9O75954 239 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 NDUFA3O95167 84 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 FSHBP01225 129 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 SOD3P08294 240 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 FRMD6-AS1P0C7T7 363 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 BMP5P22003 454 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 CNTFRP26992 372 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 G6PCP35575 357 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 ARL3P36405 182 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 SULT1A1P50225 295 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 AKR1C2P52895 323 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 AKR1C1Q04828 323 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 PIK3CD-AS1Q5SR53 167 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 BTNL3Q6UXE8 466 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 MRPL21Q7Z2W9 205 aaKnown RBP1.81□□□□□ -2.12
VPS54-202ENST00000354504 VKORC1L1Q8N0U8 176 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 LGI3Q8N145 548 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 ZNF565Q8N9K5 539 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 SECTM1Q8WVN6 248 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 ITLN2Q8WWU7 325 aaPredicted RBP1.81□□□□□ -2.12
VPS54-202ENST00000354504 RNASE6Q93091 150 aaKnown RBP1.81□□□□□ -2.12
VPS54-202ENST00000354504 LEAP2Q969E1 77 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 HIST1H2BAQ96A08 127 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 CPNE2Q96FN4 548 aaPredicted RBP1.81□□□□□ -2.12
VPS54-202ENST00000354504 NABP2Q9BQ15 211 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 RSG1Q9BU20 258 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 TMEM231Q9H6L2 316 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 PLEKHF2Q9H8W4 249 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 WDR83OSQ9Y284 106 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 HECTD1Q9ULT8 2610 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 SACSQ9NZJ4 4579 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 WNK1Q9H4A3 2382 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 MUC4Q99102 2169 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 KIR2DS1A0A191URI9 304 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 TEX50A0A1B0GTY4 177 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 RNASEK-C17orf49H0YIS7 233 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 IGHV3-7P01780 117 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 APOHP02749 345 aaPredicted RBP1.81□□□□□ -2.12
VPS54-202ENST00000354504 PFN1P07737 140 aaKnown RBP1.81□□□□□ -2.12
VPS54-202ENST00000354504 CTXN2P0C2S0 81 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 SFTA3P0C7M3 94 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 OR13C7P0DN81 318 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 RNASE2P10153 161 aaKnown RBP1.81□□□□□ -2.12
VPS54-202ENST00000354504 KIR2DS4P43632 304 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 CAMPP49913 170 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 PDLIM4P50479 330 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 ZNF83P51522 516 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 DVL1P1P54792 670 aaPredicted RBP1.81□□□□□ -2.12
VPS54-202ENST00000354504 OR2B8PP59922 312 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 UBE2NP61088 152 aaKnown RBP1.81□□□□□ -2.12
VPS54-202ENST00000354504 CYCSP99999 105 aaKnown RBP1.81□□□□□ -2.12
VPS54-202ENST00000354504 PAX8Q06710 450 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 KIR2DS1Q14954 304 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 FAM189A2Q15884 450 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 LTC4SQ16873 150 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 DPPA3Q6W0C5 159 aa1.81□□□□□ -2.12
VPS54-202ENST00000354504 C19orf35Q6ZS72 473 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms