RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 EIF5AL1Q6IS14 154 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-202ENST00000334448 CLEC9AQ6UXN8 241 aa11.84□□□□□ -0.51
CCDC88C-202ENST00000334448 ETV3LQ6ZN32 361 aa11.84□□□□□ -0.51
CCDC88C-202ENST00000334448 C5orf56Q8N8D9 126 aa11.84□□□□□ -0.51
CCDC88C-202ENST00000334448 OR10W1Q8NGF6 305 aa11.84□□□□□ -0.51
CCDC88C-202ENST00000334448 OR5R1Q8NH85 324 aa11.84□□□□□ -0.51
CCDC88C-202ENST00000334448 UBQLN2Q9UHD9 624 aa11.84□□□□□ -0.51
CCDC88C-202ENST00000334448 IGHV7-81A0A0B4J1V7 117 aa11.83□□□□□ -0.52
CCDC88C-202ENST00000334448 NCBP2LA6PVI3 153 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-202ENST00000334448 MDKP21741 143 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-202ENST00000334448 SNCAP37840 140 aa11.83□□□□□ -0.52
CCDC88C-202ENST00000334448 CX3CL1P78423 397 aa11.83□□□□□ -0.52
CCDC88C-202ENST00000334448 FXYD3Q14802 87 aa11.83□□□□□ -0.52
CCDC88C-202ENST00000334448 KLK9Q2XQG4 91 aa11.83□□□□□ -0.52
CCDC88C-202ENST00000334448 DEFB112Q30KQ8 113 aa11.83□□□□□ -0.52
CCDC88C-202ENST00000334448 OR1P1Q8NH06 330 aa11.83□□□□□ -0.52
CCDC88C-202ENST00000334448 RNASEH2CQ8TDP1 164 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-202ENST00000334448 ARPC1AQ92747 370 aa11.83□□□□□ -0.52
CCDC88C-202ENST00000334448 SLC25A33Q9BSK2 321 aa11.83□□□□□ -0.52
CCDC88C-202ENST00000334448 TMEM160Q9NX00 188 aa11.83□□□□□ -0.52
CCDC88C-202ENST00000334448 KLK9Q9UKQ9 250 aa11.83□□□□□ -0.52
CCDC88C-202ENST00000334448 TET2Q6N021 2002 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 CSPG4Q6UVK1 2322 aa11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 MYO9AB2RTY4 2548 aa11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 H3BUX3 64 aa11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 SMAD7O15105 426 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 TSPAN9O75954 239 aa11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 CRYGCP07315 174 aa11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 SEC11BP0C7V7 166 aa11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 OR13C7P0DN81 318 aa11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 SPP1P10451 314 aa11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 CRIP2P52943 208 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 SUB1P53999 127 aaKnown RBP eCLIP11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 NDPQ00604 133 aa11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 OR8G2PQ6IF36 304 aa11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 LILRB2Q8N423 598 aa11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 CACNG8Q8WXS5 425 aa11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 GNPNAT1Q96EK6 184 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 P2RX4Q99571 388 aa11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 RASL11BQ9BPW5 248 aa11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 UQCC1Q9NVA1 299 aa11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 SOX21Q9Y651 276 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 ZNF469Q96JG9 3925 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-202ENST00000334448 SVEP1Q4LDE5 3571 aa11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 NPIPB5A8MRT5 1133 aa11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 CNIH1O95406 144 aa11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 IFNA5P01569 189 aa11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 AMY1AP04745 511 aa11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 IFNA4P05014 189 aa11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 CTRB1P17538 263 aa11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 GPX4P36969 197 aaPredicted RBP11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 IER3P46695 156 aa11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 GNB1P62873 340 aa11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 CTRB2Q6GPI1 263 aa11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 CENPVQ7Z7K6 275 aaPredicted RBP11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 BCL6BQ8N143 479 aaPredicted RBP11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 OR1L6Q8NGR2 347 aa11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 TMEM68Q96MH6 324 aa11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 WDR61Q9GZS3 305 aaKnown RBP11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 ZNF580Q9UK33 172 aa11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 WDR83OSQ9Y284 106 aa11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 F11RQ9Y624 299 aaKnown RBP11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 OTOGQ6ZRI0 2925 aa11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 TEX15Q9BXT5 2789 aa11.81□□□□□ -0.52
CCDC88C-202ENST00000334448 RPS10-NUDT3A0A1W2PQS6 291 aa11.8□□□□□ -0.52
CCDC88C-202ENST00000334448 CORTO00230 105 aa11.8□□□□□ -0.52
CCDC88C-202ENST00000334448 MPDU1O75352 247 aa11.8□□□□□ -0.52
CCDC88C-202ENST00000334448 AREGP15514 252 aa11.8□□□□□ -0.52
CCDC88C-202ENST00000334448 CLLU1Q5K131 121 aa11.8□□□□□ -0.52
CCDC88C-202ENST00000334448 ALKAL2Q6UX46 152 aa11.8□□□□□ -0.52
CCDC88C-202ENST00000334448 Q6YL49 198 aa11.8□□□□□ -0.52
CCDC88C-202ENST00000334448 SPNS3Q6ZMD2 512 aa11.8□□□□□ -0.52
CCDC88C-202ENST00000334448 SSMEM1Q8WWF3 244 aa11.8□□□□□ -0.52
CCDC88C-202ENST00000334448 PSMG3Q9BT73 122 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-202ENST00000334448 SLC25A32Q9H2D1 315 aa11.8□□□□□ -0.52
CCDC88C-202ENST00000334448 TIMM9Q9Y5J7 89 aa11.8□□□□□ -0.52
CCDC88C-202ENST00000334448 NAV3Q8IVL0 2385 aa11.8□□□□□ -0.52
CCDC88C-202ENST00000334448 ANK3Q12955 4377 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-202ENST00000334448 SOX15O60248 233 aa11.79□□□□□ -0.52
CCDC88C-202ENST00000334448 EGR2P11161 476 aaPredicted RBP11.79□□□□□ -0.52
CCDC88C-202ENST00000334448 ATP6V0CP27449 155 aa11.79□□□□□ -0.52
CCDC88C-202ENST00000334448 CD69Q07108 199 aa11.79□□□□□ -0.52
CCDC88C-202ENST00000334448 ASPHD1Q5U4P2 390 aa11.79□□□□□ -0.52
CCDC88C-202ENST00000334448 TTC9CQ8N5M4 171 aa11.79□□□□□ -0.52
CCDC88C-202ENST00000334448 OR2G3Q8NGZ4 309 aa11.79□□□□□ -0.52
CCDC88C-202ENST00000334448 SGMS2Q8NHU3 365 aa11.79□□□□□ -0.52
CCDC88C-202ENST00000334448 LRRC20Q8TCA0 184 aa11.79□□□□□ -0.52
CCDC88C-202ENST00000334448 TMED6Q8WW62 240 aa11.79□□□□□ -0.52
CCDC88C-202ENST00000334448 TAF15Q92804 592 aaKnown RBP eCLIP11.79□□□□□ -0.52
CCDC88C-202ENST00000334448 HSPB9Q9BQS6 159 aa11.79□□□□□ -0.52
CCDC88C-202ENST00000334448 PAIP2BQ9ULR5 123 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-202ENST00000334448 LSM4Q9Y4Z0 139 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-202ENST00000334448 UBE2L5PA0A1B0GUS4 154 aa11.78□□□□□ -0.52
CCDC88C-202ENST00000334448 MDFIC2A0A1B0GVS7 189 aa11.78□□□□□ -0.52
CCDC88C-202ENST00000334448 FBXO24O75426 580 aa11.78□□□□□ -0.52
CCDC88C-202ENST00000334448 RAB5CP51148 216 aa11.78□□□□□ -0.52
CCDC88C-202ENST00000334448 MFAP2P55001 183 aa11.78□□□□□ -0.52
CCDC88C-202ENST00000334448 C19orf54Q5BKX5 351 aa11.78□□□□□ -0.52
CCDC88C-202ENST00000334448 ARSJQ5FYB0 599 aaPredicted RBP11.78□□□□□ -0.52
CCDC88C-202ENST00000334448 TMEM219Q86XT9 240 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms