RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 IGHV1-69DA0A0B4J2H0 117 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 PMS2P5A8MQ11 134 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 RRHO14718 337 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 NBR2O15453 112 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 ATP6V1G1O75348 118 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 ACTL6BO94805 426 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 IFNA10P01566 189 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 IGHV1-69P01742 117 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 DLX1P56177 255 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 PSG5Q15238 335 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 AANATQ16613 207 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 C2orf83Q53S99 150 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 LDLRAD2Q5SZI1 272 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 LHFPL4Q7Z7J7 247 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 Q8N6K4 173 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 TMEM217Q8N7C4 229 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 WFDC1Q9HC57 220 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 UQCC1Q9NVA1 299 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 TEX50A0A1B0GTY4 177 aa8.48□□□□□ -1.05
CLN3-248ENST00000636355 PRSS46E5RG02 174 aa8.48□□□□□ -1.05
CLN3-248ENST00000636355 SNRNP70P08621 437 aaKnown RBP8.48□□□□□ -1.05
CLN3-248ENST00000636355 FAM106CPP0CH98 169 aa8.48□□□□□ -1.05
CLN3-248ENST00000636355 COL8A1P27658 744 aa8.48□□□□□ -1.05
CLN3-248ENST00000636355 BLOC1S1P78537 153 aa8.48□□□□□ -1.05
CLN3-248ENST00000636355 ERHP84090 104 aaKnown RBP8.48□□□□□ -1.05
CLN3-248ENST00000636355 SERF2P84101 59 aa8.48□□□□□ -1.05
CLN3-248ENST00000636355 MMDQ15546 238 aa8.48□□□□□ -1.05
CLN3-248ENST00000636355 LRRC75BQ2VPJ9 315 aa8.48□□□□□ -1.05
CLN3-248ENST00000636355 SLC25A24Q6NUK1 477 aa8.48□□□□□ -1.05
CLN3-248ENST00000636355 HAPLN4Q86UW8 402 aa8.48□□□□□ -1.05
CLN3-248ENST00000636355 TEX29Q8N6K0 151 aa8.48□□□□□ -1.05
CLN3-248ENST00000636355 OR2G3Q8NGZ4 309 aa8.48□□□□□ -1.05
CLN3-248ENST00000636355 RNASEH2CQ8TDP1 164 aaKnown RBP8.48□□□□□ -1.05
CLN3-248ENST00000636355 BSCL2Q96G97 398 aaPredicted RBP8.48□□□□□ -1.05
CLN3-248ENST00000636355 C1RLQ9NZP8 487 aa8.48□□□□□ -1.05
CLN3-248ENST00000636355 METTL1Q9UBP6 276 aaKnown RBP8.48□□□□□ -1.05
CLN3-248ENST00000636355 HILPDAQ9Y5L2 63 aa8.48□□□□□ -1.05
CLN3-248ENST00000636355 CELSR2Q9HCU4 2923 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 IGHV3-72A0A0B4J1Y9 119 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 TRAV40A0A0B4J280 105 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 CENPVL3A0A0U1RRI6 287 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 CORTO00230 105 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 IGKV1D-33P01593 117 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 IGKV1-33P01594 117 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 MDKP21741 143 aaPredicted RBP8.47□□□□□ -1.05
CLN3-248ENST00000636355 S100A1P23297 94 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 ATP6V0CP27449 155 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 RPL27AP46776 148 aaKnown RBP8.47□□□□□ -1.05
CLN3-248ENST00000636355 SUB1P53999 127 aaKnown RBP eCLIP8.47□□□□□ -1.05
CLN3-248ENST00000636355 KRTAP10-9P60411 292 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 SSX2Q16385 188 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 C5orf64Q2M2E5 130 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 OR8G2PQ6IF36 304 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 ETV3LQ6ZN32 361 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 CENPVQ7Z7K6 275 aaPredicted RBP8.47□□□□□ -1.05
CLN3-248ENST00000636355 SCGB1C1Q8TD33 95 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 CACNG8Q8WXS5 425 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 EAF1Q96JC9 268 aaPredicted RBP8.47□□□□□ -1.05
CLN3-248ENST00000636355 WDR61Q9GZS3 305 aaKnown RBP8.47□□□□□ -1.05
CLN3-248ENST00000636355 PARP11Q9NR21 331 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 HIF1ANQ9NWT6 349 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 PFDN2Q9UHV9 154 aa8.47□□□□□ -1.05
CLN3-248ENST00000636355 UBE2L5PA0A1B0GUS4 154 aa8.46□□□□□ -1.06
CLN3-248ENST00000636355 C17orf112F2Z3M2 114 aa8.46□□□□□ -1.06
CLN3-248ENST00000636355 FAM157CP0CG43 387 aa8.46□□□□□ -1.06
CLN3-248ENST00000636355 SNCAP37840 140 aa8.46□□□□□ -1.06
CLN3-248ENST00000636355 ARL16Q0P5N6 197 aa8.46□□□□□ -1.06
CLN3-248ENST00000636355 PLGLAQ15195 96 aa8.46□□□□□ -1.06
CLN3-248ENST00000636355 MRGPRG-AS1Q2M3A8 158 aa8.46□□□□□ -1.06
CLN3-248ENST00000636355 FAM74A1Q5RGS3 127 aa8.46□□□□□ -1.06
CLN3-248ENST00000636355 PVRIGQ6DKI7 326 aa8.46□□□□□ -1.06
CLN3-248ENST00000636355 EIF4E3Q8N5X7 224 aaKnown RBP8.46□□□□□ -1.06
CLN3-248ENST00000636355 COMMD1Q8N668 190 aa8.46□□□□□ -1.06
CLN3-248ENST00000636355 HSD17B11Q8NBQ5 300 aa8.46□□□□□ -1.06
CLN3-248ENST00000636355 OR1L6Q8NGR2 347 aa8.46□□□□□ -1.06
CLN3-248ENST00000636355 TAF15Q92804 592 aaKnown RBP eCLIP8.46□□□□□ -1.06
CLN3-248ENST00000636355 AJUBAQ96IF1 538 aa8.46□□□□□ -1.06
CLN3-248ENST00000636355 REG4Q9BYZ8 158 aa8.46□□□□□ -1.06
CLN3-248ENST00000636355 TPSG1Q9NRR2 321 aa8.46□□□□□ -1.06
CLN3-248ENST00000636355 WDR83OSQ9Y284 106 aa8.46□□□□□ -1.06
CLN3-248ENST00000636355 FBXO7Q9Y3I1 522 aa8.46□□□□□ -1.06
CLN3-248ENST00000636355 IGLC7A0M8Q6 106 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 BTBD17A6NE02 478 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 ZNF705EA8MWA4 302 aaPredicted RBP8.45□□□□□ -1.06
CLN3-248ENST00000636355 FBXO24O75426 580 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 CA2P00918 260 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 HLA-DRB1P01911 266 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 MBP02144 154 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 IFNA4P05014 189 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 FBP1P09467 338 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 RNASE2P10153 161 aaKnown RBP8.45□□□□□ -1.06
CLN3-248ENST00000636355 TMEM11P17152 192 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 PRB3Q04118 309 aaPredicted RBP8.45□□□□□ -1.06
CLN3-248ENST00000636355 TNXAQ16473 311 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 SPINK9Q5DT21 86 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 CLEC9AQ6UXN8 241 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 IL34Q6ZMJ4 242 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 KRTAP1-3Q8IUG1 177 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 PIP4P2Q8N4L2 257 aa8.45□□□□□ -1.06
CLN3-248ENST00000636355 LFNGQ8NES3 379 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms