RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 IGHV1-46P01743 117 aa9.55□□□□□ -0.88
CLIP1-219ENST00000620786 CSRP3P50461 194 aa9.55□□□□□ -0.88
CLIP1-219ENST00000620786 LINC00114Q6XXX2 140 aa9.55□□□□□ -0.88
CLIP1-219ENST00000620786 TCF24Q7RTU0 167 aa9.55□□□□□ -0.88
CLIP1-219ENST00000620786 MESP1Q9BRJ9 268 aa9.55□□□□□ -0.88
CLIP1-219ENST00000620786 IGLV3-32A0A0A0MS00 114 aa9.54□□□□□ -0.88
CLIP1-219ENST00000620786 SAA1P0DJI8 122 aaPredicted RBP9.54□□□□□ -0.88
CLIP1-219ENST00000620786 ST6GALNAC3Q8NDV1 305 aa9.54□□□□□ -0.88
CLIP1-219ENST00000620786 COPS9Q8WXC6 57 aa9.54□□□□□ -0.88
CLIP1-219ENST00000620786 AQP10Q96PS8 301 aa9.54□□□□□ -0.88
CLIP1-219ENST00000620786 NPDC1Q9NQX5 325 aaPredicted RBP9.54□□□□□ -0.88
CLIP1-219ENST00000620786 RPRMQ9NS64 109 aa9.54□□□□□ -0.88
CLIP1-219ENST00000620786 F12P00748 615 aaPredicted RBP9.54□□□□□ -0.88
CLIP1-219ENST00000620786 ZNF672Q499Z4 452 aaPredicted RBP9.54□□□□□ -0.88
CLIP1-219ENST00000620786 MRAP2Q96G30 205 aa9.54□□□□□ -0.88
CLIP1-219ENST00000620786 RARRES2Q99969 163 aa9.54□□□□□ -0.88
CLIP1-219ENST00000620786 RBFOX2O43251 390 aaKnown RBP eCLIP9.54□□□□□ -0.883e-7■■■□□ 15.9
CLIP1-219ENST00000620786 STAG3L2P0CL84 134 aa9.54□□□□□ -0.88
CLIP1-219ENST00000620786 VMO1Q7Z5L0 202 aa9.54□□□□□ -0.88
CLIP1-219ENST00000620786 WBP1Q96G27 269 aa9.54□□□□□ -0.88
CLIP1-219ENST00000620786 SDF2L1Q9HCN8 221 aa9.54□□□□□ -0.88
CLIP1-219ENST00000620786 ZFC3H1O60293 1989 aaKnown RBP9.54□□□□□ -0.88
CLIP1-219ENST00000620786 HLA-DQA1P01909 254 aa9.54□□□□□ -0.88
CLIP1-219ENST00000620786 SRSF6Q13247 344 aaKnown RBP9.54□□□□□ -0.88
CLIP1-219ENST00000620786 C11orf91Q3C1V1 193 aa9.54□□□□□ -0.88
CLIP1-219ENST00000620786 TMEM167AQ8TBQ9 72 aa9.54□□□□□ -0.88
CLIP1-219ENST00000620786 ALKBH7Q9BT30 221 aaPredicted RBP9.54□□□□□ -0.88
CLIP1-219ENST00000620786 MRPL18Q9H0U6 180 aaKnown RBP9.54□□□□□ -0.88
CLIP1-219ENST00000620786 UQCRFS1P47985 274 aa9.54□□□□□ -0.88
CLIP1-219ENST00000620786 MSRB2Q9Y3D2 182 aa9.54□□□□□ -0.88
CLIP1-219ENST00000620786 TRAV24A0A0B4J272 114 aa9.53□□□□□ -0.88
CLIP1-219ENST00000620786 TMEM238LA0A1B0GVL6 79 aa9.53□□□□□ -0.88
CLIP1-219ENST00000620786 TMEM8BA6NDV4 472 aa9.53□□□□□ -0.88
CLIP1-219ENST00000620786 A6NJY4 79 aa9.53□□□□□ -0.88
CLIP1-219ENST00000620786 NPIPB7O75200 414 aa9.53□□□□□ -0.88
CLIP1-219ENST00000620786 DNLZQ5SXM8 178 aa9.53□□□□□ -0.88
CLIP1-219ENST00000620786 LEPP41159 167 aa9.53□□□□□ -0.88
CLIP1-219ENST00000620786 RPL24P83731 157 aaKnown RBP9.53□□□□□ -0.88
CLIP1-219ENST00000620786 PAM16Q9Y3D7 125 aa9.53□□□□□ -0.88
CLIP1-219ENST00000620786 NEUROG3Q9Y4Z2 214 aa9.53□□□□□ -0.88
CLIP1-219ENST00000620786 A0A0G2JNJ9 132 aa9.53□□□□□ -0.88
CLIP1-219ENST00000620786 NPCDR1Q9BY65 106 aa9.53□□□□□ -0.88
CLIP1-219ENST00000620786 Q9UFV3 132 aa9.53□□□□□ -0.88
CLIP1-219ENST00000620786 ZNF646O15015 1829 aaPredicted RBP9.53□□□□□ -0.88
CLIP1-219ENST00000620786 COX6CP09669 75 aa9.53□□□□□ -0.88
CLIP1-219ENST00000620786 NBEAP1P0C6P0 100 aa9.53□□□□□ -0.88
CLIP1-219ENST00000620786 RNASEH2CQ8TDP1 164 aaKnown RBP9.53□□□□□ -0.88
CLIP1-219ENST00000620786 TFF3Q07654 80 aa9.52□□□□□ -0.88
CLIP1-219ENST00000620786 SAMD13Q5VXD3 122 aa9.52□□□□□ -0.88
CLIP1-219ENST00000620786 GLMPQ8WWB7 406 aa9.52□□□□□ -0.88
CLIP1-219ENST00000620786 PAX1P15863 534 aa9.52□□□□□ -0.89
CLIP1-219ENST00000620786 C3orf36Q3SXR2 165 aa9.52□□□□□ -0.89
CLIP1-219ENST00000620786 DEFB121Q5J5C9 76 aa9.52□□□□□ -0.89
CLIP1-219ENST00000620786 HIST1H2BAQ96A08 127 aa9.52□□□□□ -0.89
CLIP1-219ENST00000620786 PLSCR4Q9NRQ2 329 aa9.52□□□□□ -0.89
CLIP1-219ENST00000620786 SCN5AQ14524 2016 aa9.52□□□□□ -0.89
CLIP1-219ENST00000620786 C19orf67A6NJJ6 358 aa9.52□□□□□ -0.89
CLIP1-219ENST00000620786 TIMM23O14925 209 aa9.52□□□□□ -0.89
CLIP1-219ENST00000620786 RHOGP84095 191 aa9.52□□□□□ -0.89
CLIP1-219ENST00000620786 CENPWQ5EE01 88 aa9.52□□□□□ -0.89
CLIP1-219ENST00000620786 PAPPA-AS1Q5QFB9 102 aa9.52□□□□□ -0.89
CLIP1-219ENST00000620786 OR13C6PQ8NH95 151 aa9.52□□□□□ -0.89
CLIP1-219ENST00000620786 SSC4DQ8WTU2 575 aa9.52□□□□□ -0.89
CLIP1-219ENST00000620786 SAP30O75446 220 aa9.52□□□□□ -0.89
CLIP1-219ENST00000620786 Q0VFX4 171 aa9.52□□□□□ -0.89
CLIP1-219ENST00000620786 OR4D5Q8NGN0 318 aa9.52□□□□□ -0.89
CLIP1-219ENST00000620786 GGACTQ9BVM4 153 aa9.52□□□□□ -0.89
CLIP1-219ENST00000620786 C7orf71A4D174 169 aa9.51□□□□□ -0.89
CLIP1-219ENST00000620786 YPEL1O60688 119 aa9.51□□□□□ -0.89
CLIP1-219ENST00000620786 UBE2DNLQ8IWF7 75 aa9.51□□□□□ -0.89
CLIP1-219ENST00000620786 YPEL2Q96QA6 119 aa9.51□□□□□ -0.89
CLIP1-219ENST00000620786 MRPS16Q9Y3D3 137 aaKnown RBP9.51□□□□□ -0.89
CLIP1-219ENST00000620786 RND3P61587 244 aa9.51□□□□□ -0.89
CLIP1-219ENST00000620786 GCSAMLQ5JQS6 135 aa9.51□□□□□ -0.89
CLIP1-219ENST00000620786 LYZL4Q96KX0 146 aa9.51□□□□□ -0.89
CLIP1-219ENST00000620786 TRAV14DV4A0A0A6YYC5 116 aa9.51□□□□□ -0.89
CLIP1-219ENST00000620786 OR52E5Q8NH55 327 aa9.51□□□□□ -0.89
CLIP1-219ENST00000620786 UPK2O00526 184 aa9.51□□□□□ -0.89
CLIP1-219ENST00000620786 LEPROTL1O95214 131 aa9.51□□□□□ -0.89
CLIP1-219ENST00000620786 PET117Q6UWS5 81 aa9.51□□□□□ -0.89
CLIP1-219ENST00000620786 HSPB9Q9BQS6 159 aa9.51□□□□□ -0.89
CLIP1-219ENST00000620786 MRPL13Q9BYD1 178 aaKnown RBP9.51□□□□□ -0.89
CLIP1-219ENST00000620786 B4DSR2 109 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 CGAP01215 116 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 MORN2Q502X0 79 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 LINC00527Q9UJ94 153 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 KNTC1P50748 2209 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 ZNF25P17030 456 aaPredicted RBP9.5□□□□□ -0.89
CLIP1-219ENST00000620786 C2orf88Q9BSF0 95 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 GGCTO75223 188 aaKnown RBP9.5□□□□□ -0.89
CLIP1-219ENST00000620786 SP5Q6BEB4 398 aaPredicted RBP9.5□□□□□ -0.89
CLIP1-219ENST00000620786 ZNF497Q6ZNH5 498 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 SFRP2Q96HF1 295 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 TRAV20A0A0B4J274 112 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 LINC00862A6NCI5 91 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 TBX6O95947 436 aaPredicted RBP9.5□□□□□ -0.89
CLIP1-219ENST00000620786 AGAP20933 346 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 ZNF585BQ52M93 769 aa9.5□□□□□ -0.89
CLIP1-219ENST00000620786 ZNF385CQ66K41 422 aaPredicted RBP9.5□□□□□ -0.89
CLIP1-219ENST00000620786 FGFBP3Q8TAT2 258 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms