RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 CNIH1O95406 144 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 CA2P00918 260 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 IFNA17P01571 189 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 IGLV2-23P01705 113 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 OPN1MWP04001 364 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 OR9G9P0C7N8 305 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 TRAPPC2P0DI81 140 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 TRAPPC2BP0DI82 140 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 OPN1MW2P0DN77 364 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 OPN1MW3P0DN78 364 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 HLA-GP17693 338 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 CXCL3P19876 107 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 BCAP31P51572 246 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 F2RL1P55085 397 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 S100A10P60903 97 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 RPL8P62917 257 aaKnown RBP4.22□□□□□ -1.73
LIG3-210ENST00000588109 CYCSP99999 105 aaKnown RBP4.22□□□□□ -1.73
LIG3-210ENST00000588109 EBI3Q14213 229 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 SMCO1Q147U7 214 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 TNXAQ16473 311 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 POU2AF1Q16633 256 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 C5orf64Q2M2E5 130 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 C2orf68Q2NKX9 166 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 NMSQ5H8A3 153 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 C9orf152Q5JTZ5 239 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 AKAP14Q86UN6 197 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 PPP1R27Q86WC6 154 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 FOXRED2Q8IWF2 684 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 MMD2Q8IY49 270 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 PUSL1Q8N0Z8 303 aaKnown RBP4.22□□□□□ -1.73
LIG3-210ENST00000588109 CADM3Q8N126 398 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 Q8N6K4 173 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 TEX45Q8NA69 505 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 ZBTB8BQ8NAP8 495 aaPredicted RBP4.22□□□□□ -1.73
LIG3-210ENST00000588109 NPBQ8NG41 125 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 OR11H7Q8NGC8 314 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 TMEM167AQ8TBQ9 72 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 PIFOQ8TCI5 191 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 ABHD5Q8WTS1 349 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 OR10C1Q96KK4 312 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 C2orf50Q96LR7 162 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 RBM14Q96PK6 669 aaKnown RBP4.22□□□□□ -1.73
LIG3-210ENST00000588109 DUX5Q96PT3 197 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 HINT2Q9BX68 163 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 ZNF436Q9C0F3 470 aaPredicted RBP4.22□□□□□ -1.73
LIG3-210ENST00000588109 COMMD5Q9GZQ3 224 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.22□□□□□ -1.73
LIG3-210ENST00000588109 FKBP11Q9NYL4 201 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 VPREB3Q9UKI3 123 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 PRNDQ9UKY0 176 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 NSG2Q9Y328 171 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 SIGLEC9Q9Y336 463 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 OR51B2Q9Y5P1 312 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 POMT1Q9Y6A1 747 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 ACANP16112 2415 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 ZANQ9Y493 2812 aa4.22□□□□□ -1.73
LIG3-210ENST00000588109 TEX15Q9BXT5 2789 aa4.21□□□□□ -1.73
LIG3-210ENST00000588109 ANK3Q12955 4377 aaKnown RBP4.21□□□□□ -1.74
LIG3-210ENST00000588109 TRAV3A0A0B4J244 114 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 DNAJC9-AS1A6NH13 148 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 SH2D7A6NKC9 451 aaPredicted RBP4.21□□□□□ -1.74
LIG3-210ENST00000588109 CEBPZOSA8MTT3 80 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 L7N2F9 121 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 ST8SIA3O43173 380 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 FGF16O43320 207 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 PFDN1O60925 122 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 CRLF1O75462 422 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 MED6O75586 246 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 CCNKO75909 580 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 NDUFA3O95167 84 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 FGF2P09038 288 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 GIPP09681 153 aaPredicted RBP4.21□□□□□ -1.74
LIG3-210ENST00000588109 FAM157CP0CG43 387 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 SLC25A6P12236 298 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 MAS1LP35410 378 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 NKX2-1P43699 371 aaPredicted RBP4.21□□□□□ -1.74
LIG3-210ENST00000588109 HOXA1P49639 335 aaPredicted RBP4.21□□□□□ -1.74
LIG3-210ENST00000588109 H2BFSP57053 126 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 VAMP2P63027 116 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 PJVKQ0ZLH3 352 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 PRSS8Q16651 343 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 LRRC37A5PQ49AS3 106 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 SPINK9Q5DT21 86 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 C16orf82Q7Z2V1 217 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 TMEM86BQ8N661 226 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 C5orf56Q8N8D9 126 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 ASB13Q8WXK3 278 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 FYTTD1Q96QD9 318 aaKnown RBP4.21□□□□□ -1.74
LIG3-210ENST00000588109 QTRT1Q9BXR0 403 aaKnown RBP4.21□□□□□ -1.74
LIG3-210ENST00000588109 KRTAP4-9Q9BYQ8 210 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 NMES1Q9C002 83 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 NPFFR1Q9GZQ6 430 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 PRDM13Q9H4Q3 707 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 ZNF430Q9H8G1 570 aaPredicted RBP4.21□□□□□ -1.74
LIG3-210ENST00000588109 PLEKHA3Q9HB20 300 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 ENY2Q9NPA8 101 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 PLSCR3Q9NRY6 295 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 ZFP57Q9NU63 452 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 COA4Q9NYJ1 87 aa4.21□□□□□ -1.74
LIG3-210ENST00000588109 CACFD1Q9UGQ2 172 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms