RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 PPIAL4GP0DN37 164 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 LYNX1P0DP58 116 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 BCL2P10415 239 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 OPRK1P41145 380 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 LGALS7P47929 136 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 ERVFRD-1P60508 538 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 RAB31Q13636 194 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 RHEBQ15382 184 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 HAGHQ16775 308 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 FAM74A3Q4VXF1 159 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 WDR25Q64LD2 544 aaPredicted RBP9.16□□□□□ -0.94
LIG3-204ENST00000585740 ACSM6Q6P461 480 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 LCN15Q6UWW0 184 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 MRPL41Q8IXM3 137 aaKnown RBP9.16□□□□□ -0.94
LIG3-204ENST00000585740 OR10G9Q8NGN4 311 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 OR10G7Q8NGN6 311 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 OR1L8Q8NGR8 309 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 ITLN2Q8WWU7 325 aaPredicted RBP9.16□□□□□ -0.94
LIG3-204ENST00000585740 RARRES2Q99969 163 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 CLEC7AQ9BXN2 247 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 VSIRQ9H7M9 311 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 CHODLQ9H9P2 273 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 NPVFQ9HCQ7 196 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 SMCO4Q9NRQ5 59 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 C2CD3Q4AC94 2353 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 CELSR2Q9HCU4 2923 aa9.16□□□□□ -0.94
LIG3-204ENST00000585740 CSMD1Q96PZ7 3565 aa9.15□□□□□ -0.94
LIG3-204ENST00000585740 IGHV2-26A0A0B4J1V2 119 aa9.15□□□□□ -0.94
LIG3-204ENST00000585740 TEX50A0A1B0GTY4 177 aa9.15□□□□□ -0.94
LIG3-204ENST00000585740 SMCO3A2RU48 225 aa9.15□□□□□ -0.94
LIG3-204ENST00000585740 SRRM4A7MD48 611 aaKnown RBP9.15□□□□□ -0.94
LIG3-204ENST00000585740 IGKV1-16P04430 117 aa9.15□□□□□ -0.94
LIG3-204ENST00000585740 OR13C7P0DN81 318 aa9.15□□□□□ -0.94
LIG3-204ENST00000585740 RPS16P62249 146 aaKnown RBP9.15□□□□□ -0.94
LIG3-204ENST00000585740 RPL8P62917 257 aaKnown RBP9.15□□□□□ -0.94
LIG3-204ENST00000585740 ERHP84090 104 aaKnown RBP9.15□□□□□ -0.94
LIG3-204ENST00000585740 ZNF726P1Q15940 193 aa9.15□□□□□ -0.94
LIG3-204ENST00000585740 TMEM249Q2WGJ8 235 aa9.15□□□□□ -0.94
LIG3-204ENST00000585740 HLA-DRB5Q30154 266 aa9.15□□□□□ -0.94
LIG3-204ENST00000585740 C2orf83Q53S99 150 aa9.15□□□□□ -0.94
LIG3-204ENST00000585740 C11orf42Q8N5U0 333 aa9.15□□□□□ -0.94
LIG3-204ENST00000585740 LY6G5BQ8NDX9 201 aa9.15□□□□□ -0.94
LIG3-204ENST00000585740 RXFP4Q8TDU9 374 aa9.15□□□□□ -0.94
LIG3-204ENST00000585740 COMMD5Q9GZQ3 224 aa9.15□□□□□ -0.94
LIG3-204ENST00000585740 PATZ1Q9HBE1 687 aaKnown RBP9.15□□□□□ -0.94
LIG3-204ENST00000585740 MANBALQ9NQG1 85 aa9.15□□□□□ -0.94
LIG3-204ENST00000585740 ZNRD1Q9P1U0 126 aa9.15□□□□□ -0.94
LIG3-204ENST00000585740 GNG13Q9P2W3 67 aa9.15□□□□□ -0.94
LIG3-204ENST00000585740 VAX2Q9UIW0 290 aa9.15□□□□□ -0.94
LIG3-204ENST00000585740 CRYBG3Q68DQ2 2970 aa9.14□□□□□ -0.95
LIG3-204ENST00000585740 SEC14L6B5MCN3 397 aa9.14□□□□□ -0.95
LIG3-204ENST00000585740 M0R036 132 aa9.14□□□□□ -0.95
LIG3-204ENST00000585740 M0R1W7 72 aa9.14□□□□□ -0.95
LIG3-204ENST00000585740 F12P00748 615 aaPredicted RBP9.14□□□□□ -0.95
LIG3-204ENST00000585740 CA2P00918 260 aa9.14□□□□□ -0.95
LIG3-204ENST00000585740 PAX6P26367 422 aa9.14□□□□□ -0.95
LIG3-204ENST00000585740 SUB1P53999 127 aaKnown RBP eCLIP9.14□□□□□ -0.95
LIG3-204ENST00000585740 AVPI1Q5T686 147 aa9.14□□□□□ -0.95
LIG3-204ENST00000585740 FAM122CQ6P4D5 195 aa9.14□□□□□ -0.95
LIG3-204ENST00000585740 TREML4Q6UXN2 200 aa9.14□□□□□ -0.95
LIG3-204ENST00000585740 RPP25LQ8N5L8 163 aaKnown RBP9.14□□□□□ -0.95
LIG3-204ENST00000585740 TEX45Q8NA69 505 aa9.14□□□□□ -0.95
LIG3-204ENST00000585740 RNF5Q99942 180 aa9.14□□□□□ -0.95
LIG3-204ENST00000585740 HINT2Q9BX68 163 aa9.14□□□□□ -0.95
LIG3-204ENST00000585740 TUBA4BQ9H853 241 aa9.14□□□□□ -0.95
LIG3-204ENST00000585740 ABCA4P78363 2273 aa9.14□□□□□ -0.95
LIG3-204ENST00000585740 MALRD1Q5VYJ5 2156 aa9.13□□□□□ -0.95
LIG3-204ENST00000585740 NUPL2O15504 423 aaKnown RBP9.13□□□□□ -0.95
LIG3-204ENST00000585740 TSPAN9O75954 239 aa9.13□□□□□ -0.95
LIG3-204ENST00000585740 IGLV1-47P01700 117 aa9.13□□□□□ -0.95
LIG3-204ENST00000585740 SOD3P08294 240 aa9.13□□□□□ -0.95
LIG3-204ENST00000585740 ATF4P18848 351 aaPredicted RBP9.13□□□□□ -0.95
LIG3-204ENST00000585740 MAS1LP35410 378 aa9.13□□□□□ -0.95
LIG3-204ENST00000585740 REG1BP48304 166 aa9.13□□□□□ -0.95
LIG3-204ENST00000585740 CDC34P49427 236 aaPredicted RBP9.13□□□□□ -0.95
LIG3-204ENST00000585740 PSMB3P49720 205 aa9.13□□□□□ -0.95
LIG3-204ENST00000585740 BSXQ3C1V8 233 aa9.13□□□□□ -0.95
LIG3-204ENST00000585740 AWAT1Q58HT5 328 aa9.13□□□□□ -0.95
LIG3-204ENST00000585740 TEPPQ6URK8 271 aa9.13□□□□□ -0.95
LIG3-204ENST00000585740 TMEM170AQ8WVE7 144 aa9.13□□□□□ -0.95
LIG3-204ENST00000585740 RPS10P5Q9NQ39 176 aa9.13□□□□□ -0.95
LIG3-204ENST00000585740 NDUFA4L2Q9NRX3 87 aa9.13□□□□□ -0.95
LIG3-204ENST00000585740 HIVEP3Q5T1R4 2406 aa9.12□□□□□ -0.95
LIG3-204ENST00000585740 A0A1W2PPV4 95 aa9.12□□□□□ -0.95
LIG3-204ENST00000585740 C7orf77A4D0Y5 90 aa9.12□□□□□ -0.95
LIG3-204ENST00000585740 ZFP92A6NM28 416 aa9.12□□□□□ -0.95
LIG3-204ENST00000585740 BUB1B-PAK6H3BSN5 160 aa9.12□□□□□ -0.95
LIG3-204ENST00000585740 IGKV1D-33P01593 117 aa9.12□□□□□ -0.95
LIG3-204ENST00000585740 IGKV1-33P01594 117 aa9.12□□□□□ -0.95
LIG3-204ENST00000585740 GPX4P36969 197 aaPredicted RBP9.12□□□□□ -0.95
LIG3-204ENST00000585740 GPR6P46095 362 aaPredicted RBP9.12□□□□□ -0.95
LIG3-204ENST00000585740 RPL29P47914 159 aaKnown RBP9.12□□□□□ -0.95
LIG3-204ENST00000585740 FGF8P55075 233 aaPredicted RBP9.12□□□□□ -0.95
LIG3-204ENST00000585740 SLC35E3Q7Z769 313 aa9.12□□□□□ -0.95
LIG3-204ENST00000585740 MMD2Q8IY49 270 aa9.12□□□□□ -0.95
LIG3-204ENST00000585740 C15orf54Q8N8G6 183 aa9.12□□□□□ -0.95
LIG3-204ENST00000585740 CACNG8Q8WXS5 425 aa9.12□□□□□ -0.95
LIG3-204ENST00000585740 TVP23CQ96ET8 276 aa9.12□□□□□ -0.95
LIG3-204ENST00000585740 NIPSNAP3BQ9BS92 247 aa9.12□□□□□ -0.95
LIG3-204ENST00000585740 SSBP3Q9BWW4 388 aaPredicted RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms