RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 HRASLSQ9HDD0 168 aa9.25□□□□□ -0.93
SS18-219ENST00000581570 BET1LQ9NYM9 111 aa9.25□□□□□ -0.93
SS18-219ENST00000581570 IGKV1D-13A0A0B4J2D9 117 aa9.24□□□□□ -0.93
SS18-219ENST00000581570 IGHV4-28A0A0C4DH34 117 aa9.24□□□□□ -0.93
SS18-219ENST00000581570 C15orf61A6NNL5 157 aa9.24□□□□□ -0.93
SS18-219ENST00000581570 CHEK1O14757 476 aa9.24□□□□□ -0.93
SS18-219ENST00000581570 CTXN2P0C2S0 81 aa9.24□□□□□ -0.93
SS18-219ENST00000581570 IGKV1-13P0DP09 117 aa9.24□□□□□ -0.93
SS18-219ENST00000581570 HIST1H1DP16402 221 aaKnown RBP9.24□□□□□ -0.93
SS18-219ENST00000581570 EIF4EBP1Q13541 118 aaPredicted RBP9.24□□□□□ -0.93
SS18-219ENST00000581570 TIMM50Q3ZCQ8 353 aa9.24□□□□□ -0.93
SS18-219ENST00000581570 LAIR2Q6ISS4 152 aa9.24□□□□□ -0.93
SS18-219ENST00000581570 ZNF66Q6ZN08 573 aa9.24□□□□□ -0.93
SS18-219ENST00000581570 GBGT1Q8N5D6 347 aa9.24□□□□□ -0.93
SS18-219ENST00000581570 TMEM116Q8NCL8 245 aa9.24□□□□□ -0.93
SS18-219ENST00000581570 BPIFB6Q8NFQ5 453 aa9.24□□□□□ -0.93
SS18-219ENST00000581570 CMTM3Q96MX0 182 aa9.24□□□□□ -0.93
SS18-219ENST00000581570 SRSF8Q9BRL6 282 aaKnown RBP9.24□□□□□ -0.93
SS18-219ENST00000581570 AIFM2Q9BRQ8 373 aa9.24□□□□□ -0.93
SS18-219ENST00000581570 MND1Q9BWT6 205 aa9.24□□□□□ -0.93
SS18-219ENST00000581570 PLCXD1Q9NUJ7 323 aa9.24□□□□□ -0.93
SS18-219ENST00000581570 TAS2R8Q9NYW2 309 aa9.24□□□□□ -0.93
SS18-219ENST00000581570 IGHV3-21A0A0B4J1V1 117 aa9.23□□□□□ -0.93
SS18-219ENST00000581570 IGHV7-4-1A0A0J9YVY3 117 aa9.23□□□□□ -0.93
SS18-219ENST00000581570 ARL6IP5O75915 188 aa9.23□□□□□ -0.93
SS18-219ENST00000581570 PAFAH1B2P68402 229 aa9.23□□□□□ -0.93
SS18-219ENST00000581570 HES5Q5TA89 166 aa9.23□□□□□ -0.93
SS18-219ENST00000581570 TMEM91Q6ZNR0 172 aa9.23□□□□□ -0.93
SS18-219ENST00000581570 DHRSXQ8N5I4 330 aa9.23□□□□□ -0.93
SS18-219ENST00000581570 UBAC2Q8NBM4 344 aa9.23□□□□□ -0.93
SS18-219ENST00000581570 OR10W1Q8NGF6 305 aa9.23□□□□□ -0.93
SS18-219ENST00000581570 GPHA2Q96T91 129 aa9.23□□□□□ -0.93
SS18-219ENST00000581570 ATP6V0BQ99437 205 aa9.23□□□□□ -0.93
SS18-219ENST00000581570 COMMD5Q9GZQ3 224 aa9.23□□□□□ -0.93
SS18-219ENST00000581570 C21orf62Q9NYP8 219 aa9.23□□□□□ -0.93
SS18-219ENST00000581570 V9GY05 133 aa9.23□□□□□ -0.93
SS18-219ENST00000581570 IGHV3-49A0A0A0MS15 119 aa9.22□□□□□ -0.93
SS18-219ENST00000581570 TRAV3A0A0B4J244 114 aa9.22□□□□□ -0.93
SS18-219ENST00000581570 UPK2O00526 184 aa9.22□□□□□ -0.93
SS18-219ENST00000581570 AMBPP02760 352 aa9.22□□□□□ -0.93
SS18-219ENST00000581570 MIFP14174 115 aa9.22□□□□□ -0.93
SS18-219ENST00000581570 DTYMKP23919 212 aa9.22□□□□□ -0.93
SS18-219ENST00000581570 SPHARQ15513 63 aa9.22□□□□□ -0.93
SS18-219ENST00000581570 Q56UQ5 140 aa9.22□□□□□ -0.93
SS18-219ENST00000581570 LIPKQ5VXJ0 399 aa9.22□□□□□ -0.93
SS18-219ENST00000581570 FAM90A2PQ658T7 463 aa9.22□□□□□ -0.93
SS18-219ENST00000581570 LEMD1Q68G75 181 aa9.22□□□□□ -0.93
SS18-219ENST00000581570 GDPD1Q8N9F7 314 aa9.22□□□□□ -0.93
SS18-219ENST00000581570 SCARB1Q8WTV0 552 aa9.22□□□□□ -0.93
SS18-219ENST00000581570 UFD1Q92890 307 aa9.22□□□□□ -0.93
SS18-219ENST00000581570 QTRT1Q9BXR0 403 aaKnown RBP9.22□□□□□ -0.93
SS18-219ENST00000581570 FKBP14Q9NWM8 211 aa9.22□□□□□ -0.93
SS18-219ENST00000581570 ELF5Q9UKW6 265 aaPredicted RBP9.22□□□□□ -0.93
SS18-219ENST00000581570 ELOA3CA0A087WX78 387 aaPredicted RBP9.21□□□□□ -0.94
SS18-219ENST00000581570 DEFB131BA0A096LNP1 70 aa9.21□□□□□ -0.94
SS18-219ENST00000581570 F8W735 103 aaPredicted RBP9.21□□□□□ -0.94
SS18-219ENST00000581570 YIF1AO95070 293 aa9.21□□□□□ -0.94
SS18-219ENST00000581570 SERPINE2P07093 398 aa9.21□□□□□ -0.94
SS18-219ENST00000581570 OR13C7P0DN81 318 aa9.21□□□□□ -0.94
SS18-219ENST00000581570 CALRP27797 417 aaKnown RBP9.21□□□□□ -0.94
SS18-219ENST00000581570 DEFB131AP59861 70 aa9.21□□□□□ -0.94
SS18-219ENST00000581570 STHQ8IWL8 128 aa9.21□□□□□ -0.94
SS18-219ENST00000581570 C8orf59Q8N0T1 100 aaPredicted RBP9.21□□□□□ -0.94
SS18-219ENST00000581570 SPAG16Q8N0X2 631 aa9.21□□□□□ -0.94
SS18-219ENST00000581570 NDUFAF3Q9BU61 184 aa9.21□□□□□ -0.94
SS18-219ENST00000581570 LSM2Q9Y333 95 aaKnown RBP9.21□□□□□ -0.94
SS18-219ENST00000581570 IGHV3OR16-13A0A075B7E8 117 aa9.2□□□□□ -0.94
SS18-219ENST00000581570 TRAV14DV4A0A0A6YYC5 116 aa9.2□□□□□ -0.94
SS18-219ENST00000581570 IGHV3-74A0A0B4J1X5 117 aa9.2□□□□□ -0.94
SS18-219ENST00000581570 METTL21EPA6NDL7 271 aa9.2□□□□□ -0.94
SS18-219ENST00000581570 DNASE2O00115 360 aaPredicted RBP9.2□□□□□ -0.94
SS18-219ENST00000581570 TNFSF12O43508 249 aa9.2□□□□□ -0.94
SS18-219ENST00000581570 DFFBO76075 338 aa9.2□□□□□ -0.94
SS18-219ENST00000581570 IFNA10P01566 189 aa9.2□□□□□ -0.94
SS18-219ENST00000581570 CTSGP08311 255 aa9.2□□□□□ -0.94
SS18-219ENST00000581570 GIG44P09565 113 aaPredicted RBP9.2□□□□□ -0.94
SS18-219ENST00000581570 TRAPPC2P0DI81 140 aa9.2□□□□□ -0.94
SS18-219ENST00000581570 TRAPPC2BP0DI82 140 aa9.2□□□□□ -0.94
SS18-219ENST00000581570 TAS2R31P59538 309 aa9.2□□□□□ -0.94
SS18-219ENST00000581570 RPS25P62851 125 aaKnown RBP9.2□□□□□ -0.94
SS18-219ENST00000581570 RELQ04864 619 aaPredicted RBP9.2□□□□□ -0.94
SS18-219ENST00000581570 WT1-ASQ06250 92 aa9.2□□□□□ -0.94
SS18-219ENST00000581570 SOHLH1Q5JUK2 328 aa9.2□□□□□ -0.94
SS18-219ENST00000581570 THOC7Q6I9Y2 204 aaKnown RBP9.2□□□□□ -0.94
SS18-219ENST00000581570 CNIH2Q6PI25 160 aa9.2□□□□□ -0.94
SS18-219ENST00000581570 TCF24Q7RTU0 167 aa9.2□□□□□ -0.94
SS18-219ENST00000581570 HSD17B13Q7Z5P4 300 aaPredicted RBP9.2□□□□□ -0.94
SS18-219ENST00000581570 MAPKAPK5-AS1Q8N8E1 139 aa9.2□□□□□ -0.94
SS18-219ENST00000581570 F11RQ9Y624 299 aaKnown RBP9.2□□□□□ -0.94
SS18-219ENST00000581570 IGLV2-18A0A075B6J9 118 aa9.19□□□□□ -0.94
SS18-219ENST00000581570 ZNF705EA8MWA4 302 aaPredicted RBP9.19□□□□□ -0.94
SS18-219ENST00000581570 K7EIM0 57 aa9.19□□□□□ -0.94
SS18-219ENST00000581570 NUPL2O15504 423 aaKnown RBP9.19□□□□□ -0.94
SS18-219ENST00000581570 GNAO1P09471 354 aa9.19□□□□□ -0.94
SS18-219ENST00000581570 NQO2P16083 231 aa9.19□□□□□ -0.94
SS18-219ENST00000581570 RAB6AP20340 208 aa9.19□□□□□ -0.94
SS18-219ENST00000581570 ARL6IP1Q15041 203 aa9.19□□□□□ -0.94
SS18-219ENST00000581570 TRAM1Q15629 374 aa9.19□□□□□ -0.94
SS18-219ENST00000581570 POU2AF1Q16633 256 aa9.19□□□□□ -0.94
SS18-219ENST00000581570 C12orf74Q32Q52 190 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms