RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 F2RL1P55085 397 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 LCN2P80188 198 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 SLC38A11Q08AI6 406 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 FAM74A1Q5RGS3 127 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 TPTE2P1Q5T6R2 138 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 MINOS1Q5TGZ0 78 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 OR8G2PQ6IF36 304 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 CCDC144NLQ6NUI1 221 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 MRPL41Q8IXM3 137 aaKnown RBP7.21□□□□□ -1.26
VPS39-207ENST00000563692 PUSL1Q8N0Z8 303 aaKnown RBP7.21□□□□□ -1.26
VPS39-207ENST00000563692 TEX45Q8NA69 505 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 HSD17B11Q8NBQ5 300 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 OR4P4Q8NGL7 312 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 TMEM167AQ8TBQ9 72 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 PCNPQ8WW12 178 aaKnown RBP7.21□□□□□ -1.26
VPS39-207ENST00000563692 PARD6GQ9BYG4 376 aaPredicted RBP7.21□□□□□ -1.26
VPS39-207ENST00000563692 PLEKHA3Q9HB20 300 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 SIRT7Q9NRC8 400 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 TMEM14BQ9NUH8 114 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 TCF19Q9Y242 345 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 AUP1Q9Y679 476 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 MINOS1-NBL1R4GNA1 71 aa7.21□□□□□ -1.26
VPS39-207ENST00000563692 DSCAML1Q8TD84 2053 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 TEX50A0A1B0GTY4 177 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 A0A1W2PN81 502 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 TRIM77I1YAP6 450 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 J3QLI3 93 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 PRH1P02810 166 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 SAA1P0DJI8 122 aaPredicted RBP7.2□□□□□ -1.26
VPS39-207ENST00000563692 GATA3P23771 443 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 CD1BP29016 333 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 CHRNA7P36544 502 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 VDAC2P45880 294 aaPredicted RBP7.2□□□□□ -1.26
VPS39-207ENST00000563692 RPL8P62917 257 aaKnown RBP7.2□□□□□ -1.26
VPS39-207ENST00000563692 ERHP84090 104 aaKnown RBP7.2□□□□□ -1.26
VPS39-207ENST00000563692 DIAPH2-AS1Q14236 149 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 LRRC75BQ2VPJ9 315 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 VMO1Q7Z5L0 202 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 OR1L8Q8NGR8 309 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 OR2G3Q8NGZ4 309 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 ZDHHC16Q969W1 377 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 FAM210AQ96ND0 272 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 TMEM147Q9BVK8 224 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 GGACTQ9BVM4 153 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 HINT2Q9BX68 163 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 PARP11Q9NR21 331 aa7.2□□□□□ -1.26
VPS39-207ENST00000563692 POLR3KQ9Y2Y1 108 aaPredicted RBP7.2□□□□□ -1.26
VPS39-207ENST00000563692 YLPM1P49750 1951 aaKnown RBP7.19□□□□□ -1.26
VPS39-207ENST00000563692 ACTL6BO94805 426 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 IFNA4P05014 189 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 ATP6V0CP27449 155 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 MAS1LP35410 378 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 SNCAP37840 140 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 CAMLGP49069 296 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 UBE2E1P51965 193 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 SUB1P53999 127 aaKnown RBP eCLIP7.19□□□□□ -1.26
VPS39-207ENST00000563692 RAB2AP61019 212 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 SERF2P84101 59 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 PRCDQ00LT1 54 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 PAX2Q02962 417 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 SPINK9Q5DT21 86 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 AKR1C8PQ5T2L2 129 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 DPPA3Q6W0C5 159 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 ETV3LQ6ZN32 361 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 HSD17B13Q7Z5P4 300 aaPredicted RBP7.19□□□□□ -1.26
VPS39-207ENST00000563692 THNSL2Q86YJ6 484 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 MMD2Q8IY49 270 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 ZNF709Q8N972 641 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 ZNF418Q8TF45 676 aaPredicted RBP7.19□□□□□ -1.26
VPS39-207ENST00000563692 MARC2Q969Z3 335 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 CXorf58Q96LI9 332 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 OR4C12Q96R67 309 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 C19orf24Q9BVV8 132 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 UQCC1Q9NVA1 299 aa7.19□□□□□ -1.26
VPS39-207ENST00000563692 TBL2Q9Y4P3 447 aaKnown RBP7.19□□□□□ -1.26
VPS39-207ENST00000563692 RAB19A4D1S5 217 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 ODF3BA8MYP8 253 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 C17orf112F2Z3M2 114 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 TEX46H3BTG2 121 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 SOX15O60248 233 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 NPY1RP25929 384 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 ARL16Q0P5N6 197 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 AANATQ16613 207 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 KRTAP24-1Q3LI83 254 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 UQCC3Q6UW78 93 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 IL34Q6ZMJ4 242 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 TMEM182Q6ZP80 229 aaPredicted RBP7.18□□□□□ -1.26
VPS39-207ENST00000563692 EIF4E3Q8N5X7 224 aaKnown RBP7.18□□□□□ -1.26
VPS39-207ENST00000563692 SLC24A4Q8NFF2 622 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 NANPQ8TBE9 248 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 MALSU1Q96EH3 234 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 JMJD8Q96S16 334 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 PSMG3Q9BT73 122 aaPredicted RBP7.18□□□□□ -1.26
VPS39-207ENST00000563692 WDR61Q9GZS3 305 aaKnown RBP7.18□□□□□ -1.26
VPS39-207ENST00000563692 SIRPDQ9H106 197 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 MMP26Q9NRE1 261 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 FBXO7Q9Y3I1 522 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 TIMM9Q9Y5J7 89 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 HILPDAQ9Y5L2 63 aa7.18□□□□□ -1.26
VPS39-207ENST00000563692 STAB1Q9NY15 2570 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms