RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 CBLN1P23435 193 aa13.33□□□□□ -0.28
HDDC3-205ENST00000559898 F2RP25116 425 aa13.33□□□□□ -0.28
HDDC3-205ENST00000559898 GPR183P32249 361 aa13.33□□□□□ -0.28
HDDC3-205ENST00000559898 GUCA2BQ16661 112 aa13.33□□□□□ -0.28
HDDC3-205ENST00000559898 GTSCR1Q86UQ5 136 aa13.33□□□□□ -0.28
HDDC3-205ENST00000559898 DYNLRB2Q8TF09 96 aa13.33□□□□□ -0.28
HDDC3-205ENST00000559898 DGCR14Q96DF8 476 aaKnown RBP13.33□□□□□ -0.28
HDDC3-205ENST00000559898 ZNF414Q96IQ9 312 aa13.33□□□□□ -0.28
HDDC3-205ENST00000559898 QTRT1Q9BXR0 403 aaKnown RBP13.33□□□□□ -0.28
HDDC3-205ENST00000559898 TUBA4BQ9H853 241 aa13.33□□□□□ -0.28
HDDC3-205ENST00000559898 COMMD9Q9P000 198 aa13.33□□□□□ -0.28
HDDC3-205ENST00000559898 M0QYG6 137 aa13.32□□□□□ -0.28
HDDC3-205ENST00000559898 OR13C7P0DN81 318 aa13.32□□□□□ -0.28
HDDC3-205ENST00000559898 TAS2R46P59540 309 aa13.32□□□□□ -0.28
HDDC3-205ENST00000559898 TMEM61Q8N0U2 210 aa13.32□□□□□ -0.28
HDDC3-205ENST00000559898 HINT2Q9BX68 163 aa13.32□□□□□ -0.28
HDDC3-205ENST00000559898 COMMD5Q9GZQ3 224 aa13.32□□□□□ -0.28
HDDC3-205ENST00000559898 VCX3AQ9NNX9 186 aa13.32□□□□□ -0.28
HDDC3-205ENST00000559898 IGHV3OR16-8A0A075B7F1 116 aa13.31□□□□□ -0.28
HDDC3-205ENST00000559898 F8W735 103 aaPredicted RBP13.31□□□□□ -0.28
HDDC3-205ENST00000559898 GPR31O00270 319 aa13.31□□□□□ -0.28
HDDC3-205ENST00000559898 TRAPPC2P0DI81 140 aa13.31□□□□□ -0.28
HDDC3-205ENST00000559898 TRAPPC2BP0DI82 140 aa13.31□□□□□ -0.28
HDDC3-205ENST00000559898 HIST1H1BP16401 226 aaKnown RBP13.31□□□□□ -0.28
HDDC3-205ENST00000559898 CTF1Q16619 201 aa13.31□□□□□ -0.28
HDDC3-205ENST00000559898 UXS1Q8NBZ7 420 aa13.31□□□□□ -0.28
HDDC3-205ENST00000559898 OR2K2Q8NGT1 345 aa13.31□□□□□ -0.28
HDDC3-205ENST00000559898 NDUFA4L2Q9NRX3 87 aa13.31□□□□□ -0.28
HDDC3-205ENST00000559898 SCAF4O95104 1147 aaKnown RBP13.3□□□□□ -0.28
HDDC3-205ENST00000559898 APOA1P02647 267 aa13.3□□□□□ -0.28
HDDC3-205ENST00000559898 SERPINE2P07093 398 aa13.3□□□□□ -0.28
HDDC3-205ENST00000559898 IZUMO4Q1ZYL8 232 aa13.3□□□□□ -0.28
HDDC3-205ENST00000559898 FAM209BQ5JX69 171 aa13.3□□□□□ -0.28
HDDC3-205ENST00000559898 BTNL8Q6UX41 500 aa13.3□□□□□ -0.28
HDDC3-205ENST00000559898 TBC1D26Q86UD7 250 aa13.3□□□□□ -0.28
HDDC3-205ENST00000559898 GDPD1Q8N9F7 314 aa13.3□□□□□ -0.28
HDDC3-205ENST00000559898 OR6F1Q8NGZ6 308 aa13.3□□□□□ -0.28
HDDC3-205ENST00000559898 CD300LFQ8TDQ1 290 aa13.3□□□□□ -0.28
HDDC3-205ENST00000559898 HIPK2Q9H2X6 1198 aa13.3□□□□□ -0.28
HDDC3-205ENST00000559898 SRD5A3Q9H8P0 318 aa13.3□□□□□ -0.28
HDDC3-205ENST00000559898 OR51B2Q9Y5P1 312 aa13.3□□□□□ -0.28
HDDC3-205ENST00000559898 TRBV7-1A0A0A6YYK4 115 aa13.29□□□□□ -0.28
HDDC3-205ENST00000559898 OR2T8A6NH00 312 aa13.29□□□□□ -0.28
HDDC3-205ENST00000559898 A8MWP6 167 aa13.29□□□□□ -0.28
HDDC3-205ENST00000559898 DHFRP00374 187 aa13.29□□□□□ -0.28
HDDC3-205ENST00000559898 LYL1P12980 280 aa13.29□□□□□ -0.28
HDDC3-205ENST00000559898 PI3P19957 117 aa13.29□□□□□ -0.28
HDDC3-205ENST00000559898 SLC25A24Q6NUK1 477 aa13.29□□□□□ -0.28
HDDC3-205ENST00000559898 OR1L8Q8NGR8 309 aa13.29□□□□□ -0.28
HDDC3-205ENST00000559898 SPATA25Q9BR10 227 aa13.29□□□□□ -0.28
HDDC3-205ENST00000559898 AIFM2Q9BRQ8 373 aa13.29□□□□□ -0.28
HDDC3-205ENST00000559898 CHRDL1Q9BU40 450 aa13.29□□□□□ -0.28
HDDC3-205ENST00000559898 KLK11Q9UBX7 282 aa13.29□□□□□ -0.28
HDDC3-205ENST00000559898 CEPT1Q9Y6K0 416 aa13.29□□□□□ -0.28
HDDC3-205ENST00000559898 OR11H12B2RN74 326 aa13.28□□□□□ -0.28
HDDC3-205ENST00000559898 PTBP1P26599 531 aaKnown RBP eCLIP13.28□□□□□ -0.28
HDDC3-205ENST00000559898 ERVK-16P61578 105 aa13.28□□□□□ -0.28
HDDC3-205ENST00000559898 TSPAN5P62079 268 aa13.28□□□□□ -0.28
HDDC3-205ENST00000559898 OR4D10Q8NGI6 311 aa13.28□□□□□ -0.28
HDDC3-205ENST00000559898 SEC22AQ96IW7 307 aa13.28□□□□□ -0.28
HDDC3-205ENST00000559898 CXorf58Q96LI9 332 aa13.28□□□□□ -0.28
HDDC3-205ENST00000559898 FAM25AB3EWG3 89 aa13.27□□□□□ -0.29
HDDC3-205ENST00000559898 FAM25CB3EWG5 89 aa13.27□□□□□ -0.29
HDDC3-205ENST00000559898 FAM25GB3EWG6 89 aa13.27□□□□□ -0.29
HDDC3-205ENST00000559898 K7EIM0 57 aa13.27□□□□□ -0.29
HDDC3-205ENST00000559898 TGOLN2O43493 480 aa13.27□□□□□ -0.29
HDDC3-205ENST00000559898 ZNF207O43670 478 aaKnown RBP13.27□□□□□ -0.29
HDDC3-205ENST00000559898 TPPPO94811 219 aa13.27□□□□□ -0.29
HDDC3-205ENST00000559898 GABARAPO95166 117 aa13.27□□□□□ -0.29
HDDC3-205ENST00000559898 C8orf88P0DMB2 117 aa13.27□□□□□ -0.29
HDDC3-205ENST00000559898 ADMP35318 185 aa13.27□□□□□ -0.29
HDDC3-205ENST00000559898 FAM106AQ4KMX7 169 aa13.27□□□□□ -0.29
HDDC3-205ENST00000559898 GPR107Q5VW38 600 aa13.27□□□□□ -0.29
HDDC3-205ENST00000559898 ZNF57Q68EA5 555 aaPredicted RBP13.27□□□□□ -0.29
HDDC3-205ENST00000559898 PLET1Q6UQ28 207 aa13.27□□□□□ -0.29
HDDC3-205ENST00000559898 OR52I2Q8NH67 350 aa13.27□□□□□ -0.29
HDDC3-205ENST00000559898 SCARB1Q8WTV0 552 aa13.27□□□□□ -0.29
HDDC3-205ENST00000559898 ABHD1Q96SE0 405 aa13.27□□□□□ -0.29
HDDC3-205ENST00000559898 ZNF436Q9C0F3 470 aaPredicted RBP13.27□□□□□ -0.29
HDDC3-205ENST00000559898 MIXL1Q9H2W2 232 aa13.27□□□□□ -0.29
HDDC3-205ENST00000559898 TECRQ9NZ01 308 aaKnown RBP13.27□□□□□ -0.29
HDDC3-205ENST00000559898 F11RQ9Y624 299 aaKnown RBP13.27□□□□□ -0.29
HDDC3-205ENST00000559898 HYDINQ4G0P3 5121 aa13.26□□□□□ -0.29
HDDC3-205ENST00000559898 IGHV3-48P01763 117 aa13.26□□□□□ -0.29
HDDC3-205ENST00000559898 RCVRNP35243 200 aa13.26□□□□□ -0.29
HDDC3-205ENST00000559898 RORCP51449 518 aa13.26□□□□□ -0.29
HDDC3-205ENST00000559898 SPINK9Q5DT21 86 aa13.26□□□□□ -0.29
HDDC3-205ENST00000559898 LAX1Q8IWV1 398 aa13.26□□□□□ -0.29
HDDC3-205ENST00000559898 CMTM1Q8IZ96 169 aa13.26□□□□□ -0.29
HDDC3-205ENST00000559898 MRGPRFQ96AM1 343 aa13.26□□□□□ -0.29
HDDC3-205ENST00000559898 CMTM3Q96MX0 182 aa13.26□□□□□ -0.29
HDDC3-205ENST00000559898 SRSF8Q9BRL6 282 aaKnown RBP13.26□□□□□ -0.29
HDDC3-205ENST00000559898 SCPEP1Q9HB40 452 aa13.26□□□□□ -0.29
HDDC3-205ENST00000559898 TMEM14BQ9NUH8 114 aa13.26□□□□□ -0.29
HDDC3-205ENST00000559898 SLC2A8Q9NY64 477 aa13.26□□□□□ -0.29
HDDC3-205ENST00000559898 DNAH1Q9P2D7 4330 aa13.25□□□□□ -0.29
HDDC3-205ENST00000559898 SMIM31A0A1B0GVY4 71 aa13.25□□□□□ -0.29
HDDC3-205ENST00000559898 C15orf61A6NNL5 157 aa13.25□□□□□ -0.29
HDDC3-205ENST00000559898 CD3DP04234 171 aa13.25□□□□□ -0.29
HDDC3-205ENST00000559898 FGF2P09038 288 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms