RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 KRBOX1C9JBD0 128 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 E7EUB6 86 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 IFNA4P05014 189 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 ZP3P21754 424 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 CNTFRP26992 372 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 MAS1LP35410 378 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 CHRNA7P36544 502 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 PAX8Q06710 450 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 ZNF616Q08AN1 781 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 C2orf83Q53S99 150 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 CCDC144NLQ6NUI1 221 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 MMD2Q8IY49 270 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 COMMD1Q8N668 190 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 NRGNQ92686 78 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 PERPQ96FX8 193 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 TPSG1Q9NRR2 321 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 WDR83OSQ9Y284 106 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 TBL2Q9Y4P3 447 aaKnown RBP10.18□□□□□ -0.78
USP3-213ENST00000559711 HILPDAQ9Y5L2 63 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 ARHGAP32A7KAX9 2087 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 A0A1B0GW64 132 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 FNDC10F2Z333 226 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 TSPAN15O95858 294 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 RNASE2P10153 161 aaKnown RBP10.18□□□□□ -0.78
USP3-213ENST00000559711 FGF7P21781 194 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 LGALS4P56470 323 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 ERHP84090 104 aaKnown RBP10.18□□□□□ -0.78
USP3-213ENST00000559711 OR10W1Q8NGF6 305 aa10.18□□□□□ -0.78
USP3-213ENST00000559711 USP9YO00507 2555 aaPredicted RBP10.17□□□□□ -0.78
USP3-213ENST00000559711 A0A1W2PRD5 423 aa10.17□□□□□ -0.78
USP3-213ENST00000559711 A0A1W2PRF3 423 aa10.17□□□□□ -0.78
USP3-213ENST00000559711 A0A1W2PRM7 423 aa10.17□□□□□ -0.78
USP3-213ENST00000559711 MPDU1O75352 247 aa10.17□□□□□ -0.78
USP3-213ENST00000559711 C10orf55Q5SWW7 151 aa10.17□□□□□ -0.78
USP3-213ENST00000559711 ZNF787Q6DD87 383 aa10.17□□□□□ -0.78
USP3-213ENST00000559711 PPP1R27Q86WC6 154 aa10.17□□□□□ -0.78
USP3-213ENST00000559711 DYNAPQ8N1N2 210 aa10.17□□□□□ -0.78
USP3-213ENST00000559711 BPIFCQ8NFQ6 507 aa10.17□□□□□ -0.78
USP3-213ENST00000559711 LINC00052Q96N35 136 aa10.17□□□□□ -0.78
USP3-213ENST00000559711 NPCDR1Q9BY65 106 aa10.17□□□□□ -0.78
USP3-213ENST00000559711 LPAR2Q9HBW0 351 aa10.17□□□□□ -0.78
USP3-213ENST00000559711 RPRMQ9NS64 109 aa10.17□□□□□ -0.78
USP3-213ENST00000559711 METTL1Q9UBP6 276 aaKnown RBP10.17□□□□□ -0.78
USP3-213ENST00000559711 MED13LQ71F56 2210 aa10.17□□□□□ -0.78
USP3-213ENST00000559711 TNCP24821 2201 aa10.16□□□□□ -0.78
USP3-213ENST00000559711 MOSP00540 346 aa10.16□□□□□ -0.78
USP3-213ENST00000559711 H2AFB1P0C5Y9 115 aa10.16□□□□□ -0.78
USP3-213ENST00000559711 SNCAP37840 140 aa10.16□□□□□ -0.78
USP3-213ENST00000559711 WT1-ASQ06250 92 aa10.16□□□□□ -0.78
USP3-213ENST00000559711 EBI3Q14213 229 aa10.16□□□□□ -0.78
USP3-213ENST00000559711 SSX2Q16385 188 aa10.16□□□□□ -0.78
USP3-213ENST00000559711 TUSC1Q2TAM9 212 aa10.16□□□□□ -0.78
USP3-213ENST00000559711 CRYBG3Q68DQ2 2970 aa10.16□□□□□ -0.78
USP3-213ENST00000559711 SPSB3Q6PJ21 355 aa10.16□□□□□ -0.78
USP3-213ENST00000559711 TREML4Q6UXN2 200 aa10.16□□□□□ -0.78
USP3-213ENST00000559711 LFNGQ8NES3 379 aa10.16□□□□□ -0.78
USP3-213ENST00000559711 NPBQ8NG41 125 aa10.16□□□□□ -0.78
USP3-213ENST00000559711 MALSU1Q96EH3 234 aa10.16□□□□□ -0.78
USP3-213ENST00000559711 AJUBAQ96IF1 538 aa10.16□□□□□ -0.78
USP3-213ENST00000559711 NPVFQ9HCQ7 196 aa10.16□□□□□ -0.78
USP3-213ENST00000559711 LSM4Q9Y4Z0 139 aaKnown RBP10.16□□□□□ -0.78
USP3-213ENST00000559711 FBN2P35556 2912 aa10.16□□□□□ -0.78
USP3-213ENST00000559711 TRAV1-1A0A0B4J248 108 aa10.15□□□□□ -0.78
USP3-213ENST00000559711 BTBD17A6NE02 478 aa10.15□□□□□ -0.78
USP3-213ENST00000559711 SOX15O60248 233 aa10.15□□□□□ -0.78
USP3-213ENST00000559711 NDUFA3O95167 84 aa10.15□□□□□ -0.78
USP3-213ENST00000559711 IGKV1D-33P01593 117 aa10.15□□□□□ -0.78
USP3-213ENST00000559711 IGKV1-33P01594 117 aa10.15□□□□□ -0.78
USP3-213ENST00000559711 CD5P06127 495 aa10.15□□□□□ -0.78
USP3-213ENST00000559711 PLA2G2AP14555 144 aa10.15□□□□□ -0.78
USP3-213ENST00000559711 SLC25A16P16260 332 aa10.15□□□□□ -0.78
USP3-213ENST00000559711 COL8A1P27658 744 aa10.15□□□□□ -0.78
USP3-213ENST00000559711 COMPP49747 757 aaPredicted RBP10.15□□□□□ -0.78
USP3-213ENST00000559711 SRSF3P84103 164 aaKnown RBP10.15□□□□□ -0.78
USP3-213ENST00000559711 TMEM41BQ5BJD5 291 aa10.15□□□□□ -0.78
USP3-213ENST00000559711 ARSJQ5FYB0 599 aaPredicted RBP10.15□□□□□ -0.78
USP3-213ENST00000559711 ZNF709Q8N972 641 aa10.15□□□□□ -0.78
USP3-213ENST00000559711 C17orf50Q8WW18 174 aa10.15□□□□□ -0.78
USP3-213ENST00000559711 C1orf159Q96HA4 380 aa10.15□□□□□ -0.78
USP3-213ENST00000559711 EAF1Q96JC9 268 aaPredicted RBP10.15□□□□□ -0.78
USP3-213ENST00000559711 SCRT1Q9BWW7 348 aa10.15□□□□□ -0.78
USP3-213ENST00000559711 FBXL15Q9H469 300 aa10.15□□□□□ -0.78
USP3-213ENST00000559711 VSIRQ9H7M9 311 aa10.15□□□□□ -0.78
USP3-213ENST00000559711 TET2Q6N021 2002 aaPredicted RBP10.15□□□□□ -0.78
USP3-213ENST00000559711 TMEM218A2RU14 115 aa10.15□□□□□ -0.79
USP3-213ENST00000559711 C17orf112F2Z3M2 114 aa10.15□□□□□ -0.79
USP3-213ENST00000559711 AGPAT2O15120 278 aa10.15□□□□□ -0.79
USP3-213ENST00000559711 ACTL6BO94805 426 aa10.15□□□□□ -0.79
USP3-213ENST00000559711 MBP02144 154 aa10.15□□□□□ -0.79
USP3-213ENST00000559711 RPL27AP46776 148 aaKnown RBP10.15□□□□□ -0.79
USP3-213ENST00000559711 PVRIGQ6DKI7 326 aa10.15□□□□□ -0.79
USP3-213ENST00000559711 OR2T10Q8NGZ9 312 aa10.15□□□□□ -0.79
USP3-213ENST00000559711 MBD3L1Q8WWY6 194 aa10.15□□□□□ -0.79
USP3-213ENST00000559711 CENPVL3A0A0U1RRI6 287 aa10.14□□□□□ -0.79
USP3-213ENST00000559711 IGLC7A0M8Q6 106 aa10.14□□□□□ -0.79
USP3-213ENST00000559711 SMCO3A2RU48 225 aa10.14□□□□□ -0.79
USP3-213ENST00000559711 FCN1O00602 326 aa10.14□□□□□ -0.79
USP3-213ENST00000559711 NBR2O15453 112 aa10.14□□□□□ -0.79
USP3-213ENST00000559711 HBE1P02100 147 aa10.14□□□□□ -0.79
USP3-213ENST00000559711 SNRNP70P08621 437 aaKnown RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms