RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 TMA7Q9Y2S6 64 aaKnown RBP4.88□□□□□ -1.63
VIPAS39-204ENST00000553576 LSM4Q9Y4Z0 139 aaKnown RBP4.88□□□□□ -1.63
VIPAS39-204ENST00000553576 HIVEP3Q5T1R4 2406 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 ARHGAP32A7KAX9 2087 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 PLXNB1O43157 2135 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 ADGRG4Q8IZF6 3080 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 A0A087WWC5 75 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 UBE2L5PA0A1B0GUS4 154 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 MED19A0JLT2 244 aaPredicted RBP4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 C7orf77A4D0Y5 90 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 COLCA2A8K830 154 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 B4DEV8 164 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 RRHO14718 337 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 TSPAN4O14817 238 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 IFNA10P01566 189 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 IGKV1D-33P01593 117 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 IGKV1-33P01594 117 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 IGLV1-47P01700 117 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 PF4P02776 101 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 IGKV1-16P04430 117 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 FOLR2P14207 255 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 USF1P22415 310 aaPredicted RBP4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 IL3RAP26951 378 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 LGALS7P47929 136 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 GNG10P50151 68 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 PRRX1P54821 245 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 ERVFRD-1P60508 538 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 RHEBQ15382 184 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 ACOT6Q3I5F7 207 aaPredicted RBP4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 RNF212Q495C1 297 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 SLC35E3Q7Z769 313 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 C15orf54Q8N8G6 183 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 ZNF709Q8N972 641 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 TEX45Q8NA69 505 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 OR10G9Q8NGN4 311 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 OR10G7Q8NGN6 311 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 OR1L8Q8NGR8 309 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 VSTM2AQ8TAG5 236 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 TMEM167AQ8TBQ9 72 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 CACNG8Q8WXS5 425 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 H1FXQ92522 213 aaKnown RBP4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 FLYWCH2Q96CP2 140 aaKnown RBP4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 NEIL1Q96FI4 390 aaPredicted RBP4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 C1orf159Q96HA4 380 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 TMEM133Q9H2Q1 129 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 ENY2Q9NPA8 101 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 VAX2Q9UIW0 290 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 OR51B2Q9Y5P1 312 aa4.87□□□□□ -1.63
VIPAS39-204ENST00000553576 NBEAQ8NFP9 2946 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 COL6A6A6NMZ7 2263 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 SPTBN4Q9H254 2564 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 hCG_1809904A0A1W2PP81 198 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 A0A1W2PPE2 198 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 A0A1W2PR64 198 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 A0A1W2PRV1 198 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 SMCO3A2RU48 225 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 MAP1LC3B2A6NCE7 125 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 TMEM250H0YL14 139 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 LY6LH3BQJ8 138 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 GOSR1O95249 250 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 IFNA1P01562 189 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 IGLV2-23P01705 113 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 CRYGBP07316 175 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 SAA1P0DJI8 122 aaPredicted RBP4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 OR13C7P0DN81 318 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 BCL2P10415 239 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 NPY1RP25929 384 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 GPX4P36969 197 aaPredicted RBP4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 RPL29P47914 159 aaKnown RBP4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 PSMB3P49720 205 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 RAB13P51153 203 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 PAX2Q02962 417 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 HLA-DRB5Q30154 266 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 FFAR4Q5NUL3 377 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 WDR25Q64LD2 544 aaPredicted RBP4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 FAM90A2PQ658T7 463 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 PVRIGQ6DKI7 326 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 C1orf122Q6ZSJ8 110 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 SSX7Q7RTT5 188 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 TMEM144Q7Z5S9 345 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 PNKDQ8N490 385 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 SLC24A4Q8NFF2 622 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 OR10X1Q8NGY0 326 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 RXFP4Q8TDU9 374 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 ITLN2Q8WWU7 325 aaPredicted RBP4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 RAB24Q969Q5 203 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 TXNDC17Q9BRA2 123 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 C19orf24Q9BVV8 132 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 MRPL20Q9BYC9 149 aaKnown RBP4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 MAP1LC3BQ9GZQ8 125 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 MANBALQ9NQG1 85 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 KCNIP2Q9NS61 270 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 TMEM242Q9NWH2 141 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 WASHC3Q9Y3C0 194 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 KALRNO60229 2985 aa4.86□□□□□ -1.63
VIPAS39-204ENST00000553576 SMG1Q96Q15 3661 aaKnown RBP4.85□□□□□ -1.63
VIPAS39-204ENST00000553576 IGHV2-26A0A0B4J1V2 119 aa4.85□□□□□ -1.63
VIPAS39-204ENST00000553576 PPIAL4CA0A0B4J2A2 164 aa4.85□□□□□ -1.63
VIPAS39-204ENST00000553576 A0A1W2PN81 502 aa4.85□□□□□ -1.63
VIPAS39-204ENST00000553576 CXorf65A6NEN9 183 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms