RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.02□□□□□ -1.77
LIMA1-214ENST00000552783 WDR83OSQ9Y284 106 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 PCSK5Q92824 1860 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 TNRC6BQ9UPQ9 1833 aaKnown RBP4.02□□□□□ -1.77
LIMA1-214ENST00000552783 TRGV5A0A0B4J1U4 118 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 A0A1W2PN81 502 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 A0A1W2PPV4 95 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 LNP1A1A4G5 178 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 NPIPB11E5RHQ5 1161 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 BMPR1BO00238 502 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 SS18L1O75177 396 aaPredicted RBP4.02□□□□□ -1.77
LIMA1-214ENST00000552783 MT-CO3P00414 261 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 CGAP01215 116 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 MYOD1P15172 320 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 NTF3P20783 257 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 CD24P25063 80 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 TSPOP30536 169 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 SRIP30626 198 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 ARR3P36575 388 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 RANP62826 216 aaKnown RBP4.02□□□□□ -1.77
LIMA1-214ENST00000552783 SUMO1P63165 101 aaKnown RBP4.02□□□□□ -1.77
LIMA1-214ENST00000552783 TMEM136Q6ZRR5 245 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 MOB3BQ86TA1 216 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 DEFB108BQ8NET1 73 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 MRGPRDQ8TDS7 321 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 C22orf15Q8WYQ4 148 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 TECTBQ96PL2 329 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 RNF2Q99496 336 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 RTL8AQ9BWD3 113 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 SFXN3Q9BWM7 321 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 CLEC7AQ9BXN2 247 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 NAT8BQ9UHF3 227 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 LOC102724200A0A096LPH7 203 aaPredicted RBP4.02□□□□□ -1.77
LIMA1-214ENST00000552783 FAM90A26D6RGX4 464 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 CELA3BP08861 270 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 STAG3L2P0CL84 134 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 STAG3L3P0CL85 134 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 HNRNPA3P51991 378 aaKnown RBP4.02□□□□□ -1.77
LIMA1-214ENST00000552783 Q0VG73 95 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 SLAQ13239 276 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 RIPPLY2Q5TAB7 128 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 HES3Q5TGS1 186 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 LEMD1Q68G75 181 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 MRPL52Q86TS9 123 aaKnown RBP4.02□□□□□ -1.77
LIMA1-214ENST00000552783 SCCPDHQ8NBX0 429 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 OR4F17Q8NGA8 305 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 EAF1Q96JC9 268 aaPredicted RBP4.02□□□□□ -1.77
LIMA1-214ENST00000552783 GUCD1Q96NT3 240 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 GGTLC1Q9BX51 225 aa4.02□□□□□ -1.77
LIMA1-214ENST00000552783 MBNL3Q9NUK0 354 aaKnown RBP4.02□□□□□ -1.77
LIMA1-214ENST00000552783 KLF13Q9Y2Y9 288 aaPredicted RBP4.02□□□□□ -1.77
LIMA1-214ENST00000552783 INTS1Q8N201 2190 aaKnown RBP4.01□□□□□ -1.77
LIMA1-214ENST00000552783 NAV3Q8IVL0 2385 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 PLXNB1O43157 2135 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 LRP5LA4QPB2 252 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 DPRXA6NFQ7 191 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 SH2D7A6NKC9 451 aaPredicted RBP4.01□□□□□ -1.77
LIMA1-214ENST00000552783 ZNF253O75346 499 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 ACTL6BO94805 426 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 CA2P00918 260 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 GATA2P23769 480 aaPredicted RBP4.01□□□□□ -1.77
LIMA1-214ENST00000552783 PMCHL1Q16048 86 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 GDF5OSQ5U4N7 250 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 EBLN2Q6P2I7 272 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 C1orf229Q6ZS94 237 aaPredicted RBP4.01□□□□□ -1.77
LIMA1-214ENST00000552783 ARL6IP6Q8N6S5 226 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 ZNF645Q8N7E2 425 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 OR4B1Q8NGF8 309 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 TSKUQ8WUA8 353 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 LOXL4Q96JB6 756 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 LINC00479Q96M42 142 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 FER1L6-AS2Q96M78 137 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 ALKBH7Q9BT30 221 aaPredicted RBP4.01□□□□□ -1.77
LIMA1-214ENST00000552783 SSBP3Q9BWW4 388 aaPredicted RBP4.01□□□□□ -1.77
LIMA1-214ENST00000552783 TECRQ9NZ01 308 aaKnown RBP4.01□□□□□ -1.77
LIMA1-214ENST00000552783 CEP295Q9C0D2 2601 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 C9orf172C9J069 976 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 PRSS46E5RG02 174 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 DNPH1O43598 174 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 HBZP02008 142 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 CRYBB3P26998 211 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 GPR6P46095 362 aaPredicted RBP4.01□□□□□ -1.77
LIMA1-214ENST00000552783 UBE2V1Q13404 147 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 EFNB3Q15768 340 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 ATP6V1FQ16864 119 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 PRAMEF6Q5VXH4 476 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 PQLC2Q6ZP29 291 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 H2BFWTQ7Z2G1 175 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 MCRIP2Q9BUT9 160 aaKnown RBP4.01□□□□□ -1.77
LIMA1-214ENST00000552783 UQCR10Q9UDW1 63 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 COX11Q9Y6N1 276 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 IGHV2OR16-5A0A0B4J2B6 119 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.01□□□□□ -1.77
LIMA1-214ENST00000552783 ZNF324O75467 553 aaPredicted RBP4.01□□□□□ -1.77
LIMA1-214ENST00000552783 WISP2O76076 250 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 IGLL1P15814 213 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 GCHFRP30047 84 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 CLDN18P56856 261 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 ERVK11-1P61568 191 aa4.01□□□□□ -1.77
LIMA1-214ENST00000552783 TNXAQ16473 311 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms