RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 ZNF506Q5JVG8 444 aa13.43□□□□□ -0.26
CHMP1A-204ENST00000547687 LCN15Q6UWW0 184 aa13.43□□□□□ -0.26
CHMP1A-204ENST00000547687 RCC1LQ96I51 464 aaKnown RBP13.43□□□□□ -0.26
CHMP1A-204ENST00000547687 TCF19Q9Y242 345 aa13.43□□□□□ -0.26
CHMP1A-204ENST00000547687 C15orf61A6NNL5 157 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 INAFM1C9JVW0 142 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 RTL8BQ17RB0 113 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 TMEM155Q4W5P6 130 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 SOHLH1Q5JUK2 328 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 ZNF833PQ6ZTB9 187 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 SLC35D1Q9NTN3 355 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 MIOXQ9UGB7 285 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 A0A096LNT2 108 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 S100A6P06703 90 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 SRP19P09132 144 aaKnown RBP13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 S100A12P80511 92 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 POU2AF1Q16633 256 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 ZNF600Q6ZNG1 722 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 SSX7Q7RTT5 188 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 OR8B3Q8NGG8 313 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 OR13D1Q8NGV5 346 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 RXFP4Q8TDU9 374 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 C10orf105Q8TEF2 133 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 RAB39BQ96DA2 213 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 NEIL1Q96FI4 390 aaPredicted RBP13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 OR8B2Q96RD0 313 aa13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 FOXA2Q9Y261 457 aaPredicted RBP13.42□□□□□ -0.26
CHMP1A-204ENST00000547687 HSPB1P04792 205 aaKnown RBP13.41□□□□□ -0.26
CHMP1A-204ENST00000547687 MDKP21741 143 aaPredicted RBP13.41□□□□□ -0.26
CHMP1A-204ENST00000547687 HOXA1P49639 335 aaPredicted RBP13.41□□□□□ -0.26
CHMP1A-204ENST00000547687 DLX6P56179 175 aa13.41□□□□□ -0.26
CHMP1A-204ENST00000547687 HSPE1P61604 102 aaKnown RBP13.41□□□□□ -0.26
CHMP1A-204ENST00000547687 KHDC3LQ587J8 217 aa13.41□□□□□ -0.26
CHMP1A-204ENST00000547687 ACSM6Q6P461 480 aa13.41□□□□□ -0.26
CHMP1A-204ENST00000547687 ZNF709Q8N972 641 aa13.41□□□□□ -0.26
CHMP1A-204ENST00000547687 RPS10P5Q9NQ39 176 aa13.41□□□□□ -0.26
CHMP1A-204ENST00000547687 TMEM14BQ9NUH8 114 aa13.41□□□□□ -0.26
CHMP1A-204ENST00000547687 GNG13Q9P2W3 67 aa13.41□□□□□ -0.26
CHMP1A-204ENST00000547687 ARHGAP32A7KAX9 2087 aa13.41□□□□□ -0.26
CHMP1A-204ENST00000547687 TRBV23-1A0A0A0MS06 115 aa13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 M0R036 132 aa13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 RRHO14718 337 aa13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 MBP02144 154 aa13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 FGF8P55075 233 aaPredicted RBP13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 AWAT1Q58HT5 328 aa13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 WDR25Q64LD2 544 aaPredicted RBP13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 ETV3LQ6ZN32 361 aa13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 ABHD12Q8N2K0 398 aa13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 NPCDR1Q9BY65 106 aa13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 UNKLQ9H9P5 680 aaKnown RBP13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 SLC39A9Q9NUM3 307 aa13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.4□□□□□ -0.269e-6■■□□□ 12.6
CHMP1A-204ENST00000547687 LOC102723971A0A1B0GUV8 181 aa13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 IGKV1D-33P01593 117 aa13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 IGKV1-33P01594 117 aa13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 IGKV1-16P04430 117 aa13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 SNRNP70P08621 437 aaKnown RBP13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 CD1BP29016 333 aa13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 GPR6P46095 362 aaPredicted RBP13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 RPP25LQ8N5L8 163 aaKnown RBP13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 C11orf42Q8N5U0 333 aa13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 SMCO4Q9NRQ5 59 aa13.4□□□□□ -0.26
CHMP1A-204ENST00000547687 C7orf77A4D0Y5 90 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 MAP1LC3B2A6NCE7 125 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 C17orf112F2Z3M2 114 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 IL6RP08887 468 aaPredicted RBP13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 FBP1P09467 338 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 FFAR4Q5NUL3 377 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 C20orf24Q9BUV8 137 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 MRPL20Q9BYC9 149 aaKnown RBP13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 MAP1LC3BQ9GZQ8 125 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 PATZ1Q9HBE1 687 aaKnown RBP13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 ENY2Q9NPA8 101 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 PRNDQ9UKY0 176 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 OR51B2Q9Y5P1 312 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 SRRM4A7MD48 611 aaKnown RBP13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 J3QR06 171 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 UPK2O00526 184 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 AKR1C3P42330 323 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 PDLIM4P50479 330 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 CEBPGP53567 150 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 RAB11AP62491 216 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 LINC00518Q8N0U6 118 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 C8orf31Q8N9H6 132 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 OR10G4Q8NGN3 311 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 OR10G9Q8NGN4 311 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 OR10G7Q8NGN6 311 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 OR10X1Q8NGY0 326 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 GGACTQ9BVM4 153 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 WDR83OSQ9Y284 106 aa13.39□□□□□ -0.27
CHMP1A-204ENST00000547687 ZFP92A6NM28 416 aa13.38□□□□□ -0.27
CHMP1A-204ENST00000547687 APOA2P02652 100 aa13.38□□□□□ -0.27
CHMP1A-204ENST00000547687 DSCR9P59020 149 aa13.38□□□□□ -0.27
CHMP1A-204ENST00000547687 LINC00311Q8N616 119 aa13.38□□□□□ -0.27
CHMP1A-204ENST00000547687 ZNF596Q8TC21 504 aa13.38□□□□□ -0.27
CHMP1A-204ENST00000547687 BPESC1Q9GZL8 116 aa13.38□□□□□ -0.27
CHMP1A-204ENST00000547687 PUS1Q9Y606 427 aaKnown RBP eCLIP13.38□□□□□ -0.27
CHMP1A-204ENST00000547687 PPIAL4CA0A0B4J2A2 164 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 SMCO3A2RU48 225 aa13.37□□□□□ -0.27
CHMP1A-204ENST00000547687 H7C2Y5 167 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms