RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	LY86	O95711	162 aa		9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	GIP	P09681	153 aa	Predicted RBP	9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	CXCL3	P19876	107 aa		9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	BCAP31	P51572	246 aa		9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	RPP30	P78346	268 aa	Known RBP	9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	SLC35B1	P78383	322 aa		9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	NDP	Q00604	133 aa		9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	MRGPRG-AS1	Q2M3A8	158 aa		9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	LRRC37A5P	Q49AS3	106 aa		9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	OR4F5	Q8NH21	305 aa		9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	SGMS2	Q8NHU3	365 aa		9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	DTD1	Q8TEA8	209 aa		9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	CIB3	Q96Q77	187 aa	Predicted RBP	9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	SRSF8	Q9BRL6	282 aa	Known RBP	9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	RBKS	Q9H477	322 aa		9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	HEYL	Q9NQ87	328 aa	Predicted RBP	9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	HSPB7	Q9UBY9	170 aa		9.4	□□□□□ -0.9
DDB1-223	ENST00000543658	TRAV41	A0A0B4J266	112 aa		9.39	□□□□□ -0.91
DDB1-223	ENST00000543658	SYNGR2	O43760	224 aa		9.39	□□□□□ -0.91
DDB1-223	ENST00000543658	SSSCA1	O60232	199 aa		9.39	□□□□□ -0.91
DDB1-223	ENST00000543658	APELA	P0DMC3	54 aa		9.39	□□□□□ -0.91
DDB1-223	ENST00000543658	IAPP	P10997	89 aa		9.39	□□□□□ -0.91
DDB1-223	ENST00000543658	SNCA	P37840	140 aa		9.39	□□□□□ -0.91
DDB1-223	ENST00000543658	H2BFS	P57053	126 aa		9.39	□□□□□ -0.91
DDB1-223	ENST00000543658	RAP2B	P61225	183 aa		9.39	□□□□□ -0.91
DDB1-223	ENST00000543658	CD83	Q01151	205 aa		9.39	□□□□□ -0.91
DDB1-223	ENST00000543658	FGL1	Q08830	312 aa		9.39	□□□□□ -0.91
DDB1-223	ENST00000543658	CXorf66	Q5JRM2	361 aa	Predicted RBP	9.39	□□□□□ -0.91
DDB1-223	ENST00000543658		Q6ZSV7	163 aa		9.39	□□□□□ -0.91
DDB1-223	ENST00000543658	STPG2	Q8N412	459 aa		9.39	□□□□□ -0.91
DDB1-223	ENST00000543658	LFNG	Q8NES3	379 aa		9.39	□□□□□ -0.91
DDB1-223	ENST00000543658	MAGT1	Q9H0U3	335 aa		9.39	□□□□□ -0.91
DDB1-223	ENST00000543658	NDUFA4L2	Q9NRX3	87 aa		9.39	□□□□□ -0.91
DDB1-223	ENST00000543658	RCL1	Q9Y2P8	373 aa	Known RBP	9.39	□□□□□ -0.91
DDB1-223	ENST00000543658		A0A1B0GVG6	124 aa		9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	CCNK	O75909	580 aa		9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	TSPAN9	O75954	239 aa		9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	NDUFA7	O95182	113 aa		9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	MBP	P02686	304 aa	Predicted RBP	9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	IGF1	P05019	195 aa		9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	OR13C7	P0DN81	318 aa		9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	DEFA4	P12838	97 aa		9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	SUB1	P53999	127 aa	Known RBP eCLIP	9.38	□□□□□ -0.91	1e-6	■■■■■ 30.7
DDB1-223	ENST00000543658	POLR2G	P62487	172 aa	Known RBP eCLIP	9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	RPL23A	P62750	156 aa	Known RBP	9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	RAB32	Q13637	225 aa		9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	TMEM95	Q3KNT9	176 aa		9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	AARD	Q4LEZ3	155 aa		9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	PDLIM3	Q53GG5	364 aa	Predicted RBP	9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	AKAP14	Q86UN6	197 aa		9.38	□□□□□ -0.91
DDB1-223	ENST00000543658		Q8N2B8	174 aa		9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	PPP1R1C	Q8WVI7	109 aa		9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	RAB40C	Q96S21	281 aa		9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	ZNF355P	Q9NSJ1	428 aa		9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	LINC00527	Q9UJ94	153 aa		9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	PAIP2B	Q9ULR5	123 aa	Known RBP	9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	WSB1	Q9Y6I7	421 aa		9.38	□□□□□ -0.91
DDB1-223	ENST00000543658	PSMB11	A5LHX3	300 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	TEX22	C9J3V5	150 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658		E7EUB6	86 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658		K7EPK0	472 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	IFNA10	P01566	189 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	REG1A	P05451	166 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	PSMB6	P28072	239 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	CRIP2	P52943	208 aa	Predicted RBP	9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	SSBP2	P81877	361 aa	Predicted RBP	9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	SRSF2	Q01130	221 aa	Known RBP	9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	ID3	Q02535	119 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	AKIRIN2	Q53H80	203 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658		Q6ZS46	218 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	CENPV	Q7Z7K6	275 aa	Predicted RBP	9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	NOXA1	Q86UR1	476 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	SLC24A4	Q8NFF2	622 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	OR10W1	Q8NGF6	305 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	OR1L6	Q8NGR2	347 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	FAM110D	Q8TAY7	271 aa	Predicted RBP	9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	THAP6	Q8TBB0	222 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	NOL4L	Q96MY1	436 aa	Predicted RBP	9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	C16orf95	Q9H693	158 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	PSENEN	Q9NZ42	101 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	ZNF580	Q9UK33	172 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	FBXO7	Q9Y3I1	522 aa		9.37	□□□□□ -0.91
DDB1-223	ENST00000543658	IGLC7	A0M8Q6	106 aa		9.36	□□□□□ -0.91
DDB1-223	ENST00000543658	CGB1	A6NKQ9	187 aa		9.36	□□□□□ -0.91
DDB1-223	ENST00000543658	LINC01548	A6NM66	108 aa		9.36	□□□□□ -0.91
DDB1-223	ENST00000543658	NPIPB5	A8MRT5	1133 aa		9.36	□□□□□ -0.91
DDB1-223	ENST00000543658		G3V318	75 aa		9.36	□□□□□ -0.91
DDB1-223	ENST00000543658	DEDD	O75618	318 aa		9.36	□□□□□ -0.91
DDB1-223	ENST00000543658	HKR1	P10072	659 aa		9.36	□□□□□ -0.91
DDB1-223	ENST00000543658	AREG	P15514	252 aa		9.36	□□□□□ -0.91
DDB1-223	ENST00000543658	NPY1R	P25929	384 aa		9.36	□□□□□ -0.91
DDB1-223	ENST00000543658	HTR2B	P41595	481 aa		9.36	□□□□□ -0.91
DDB1-223	ENST00000543658	RAB11A	P62491	216 aa		9.36	□□□□□ -0.91
DDB1-223	ENST00000543658	SRSF4	Q08170	494 aa	Known RBP	9.36	□□□□□ -0.91
DDB1-223	ENST00000543658	OR2C3	Q8N628	320 aa		9.36	□□□□□ -0.91
DDB1-223	ENST00000543658	OR5T1	Q8NG75	326 aa		9.36	□□□□□ -0.91
DDB1-223	ENST00000543658	OR2T35	Q8NGX2	323 aa		9.36	□□□□□ -0.91
DDB1-223	ENST00000543658	CHAC2	Q8WUX2	184 aa		9.36	□□□□□ -0.91
DDB1-223	ENST00000543658		U3KQ87	197 aa		9.36	□□□□□ -0.91
DDB1-223	ENST00000543658		A0A1B0GUS0	222 aa		9.35	□□□□□ -0.91

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