RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 THYN1Q9P016 225 aa13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 TSSC4Q9Y5U2 329 aaPredicted RBP13.76□□□□□ -0.21
CLSTN3-210ENST00000540931 LINC01548A6NM66 108 aa13.75□□□□□ -0.21
CLSTN3-210ENST00000540931 SNRPGP15A8MWD9 76 aa13.75□□□□□ -0.21
CLSTN3-210ENST00000540931 IGLV1-40P01703 118 aa13.75□□□□□ -0.21
CLSTN3-210ENST00000540931 EGR2P11161 476 aaPredicted RBP13.75□□□□□ -0.21
CLSTN3-210ENST00000540931 SPCS3P61009 180 aa13.75□□□□□ -0.21
CLSTN3-210ENST00000540931 ERHP84090 104 aaKnown RBP13.75□□□□□ -0.21
CLSTN3-210ENST00000540931 NDPQ00604 133 aa13.75□□□□□ -0.21
CLSTN3-210ENST00000540931 SMCO1Q147U7 214 aa13.75□□□□□ -0.21
CLSTN3-210ENST00000540931 TMEM95Q3KNT9 176 aa13.75□□□□□ -0.21
CLSTN3-210ENST00000540931 C19orf54Q5BKX5 351 aa13.75□□□□□ -0.21
CLSTN3-210ENST00000540931 NDUFA11Q86Y39 141 aa13.75□□□□□ -0.21
CLSTN3-210ENST00000540931 FYTTD1Q96QD9 318 aaKnown RBP13.75□□□□□ -0.21
CLSTN3-210ENST00000540931 NDUFA4L2Q9NRX3 87 aa13.75□□□□□ -0.21
CLSTN3-210ENST00000540931 WSB1Q9Y6I7 421 aa13.75□□□□□ -0.21
CLSTN3-210ENST00000540931 TEX50A0A1B0GTY4 177 aa13.74□□□□□ -0.21
CLSTN3-210ENST00000540931 FAM90A26D6RGX4 464 aa13.74□□□□□ -0.21
CLSTN3-210ENST00000540931 INS-IGF2F8WCM5 200 aa13.74□□□□□ -0.21
CLSTN3-210ENST00000540931 IFNA17P01571 189 aa13.74□□□□□ -0.21
CLSTN3-210ENST00000540931 PRCDQ00LT1 54 aa13.74□□□□□ -0.21
CLSTN3-210ENST00000540931 CD83Q01151 205 aa13.74□□□□□ -0.21
CLSTN3-210ENST00000540931 PDLIM3Q53GG5 364 aaPredicted RBP13.74□□□□□ -0.21
CLSTN3-210ENST00000540931 NMSQ5H8A3 153 aa13.74□□□□□ -0.21
CLSTN3-210ENST00000540931 NOXA1Q86UR1 476 aa13.74□□□□□ -0.21
CLSTN3-210ENST00000540931 LHFPL5Q8TAF8 219 aa13.74□□□□□ -0.21
CLSTN3-210ENST00000540931 USMG5Q96IX5 58 aa13.74□□□□□ -0.21
CLSTN3-210ENST00000540931 PLEKHA3Q9HB20 300 aa13.74□□□□□ -0.21
CLSTN3-210ENST00000540931 MGAM2Q2M2H8 2515 aa13.74□□□□□ -0.21
CLSTN3-210ENST00000540931 TCRBV4S1A1TA0A5B7 111 aa13.73□□□□□ -0.21
CLSTN3-210ENST00000540931 MED6O75586 246 aa13.73□□□□□ -0.21
CLSTN3-210ENST00000540931 CRYGCP07315 174 aa13.73□□□□□ -0.21
CLSTN3-210ENST00000540931 PSMB8P28062 276 aa13.73□□□□□ -0.21
CLSTN3-210ENST00000540931 SUB1P53999 127 aaKnown RBP eCLIP13.73□□□□□ -0.21
CLSTN3-210ENST00000540931 ATP5IP56385 69 aaPredicted RBP13.73□□□□□ -0.21
CLSTN3-210ENST00000540931 SSBP2P81877 361 aaPredicted RBP13.73□□□□□ -0.21
CLSTN3-210ENST00000540931 ANKRD55Q3KP44 614 aa13.73□□□□□ -0.21
CLSTN3-210ENST00000540931 LYZL2Q7Z4W2 148 aa13.73□□□□□ -0.21
CLSTN3-210ENST00000540931 RBMXL1Q96E39 390 aaKnown RBP13.73□□□□□ -0.21
CLSTN3-210ENST00000540931 FAM103A1Q9BTL3 118 aaKnown RBP13.73□□□□□ -0.21
CLSTN3-210ENST00000540931 LINC00527Q9UJ94 153 aa13.73□□□□□ -0.21
CLSTN3-210ENST00000540931 TRAV3A0A0B4J244 114 aa13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 A0A0B4J293 547 aa13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 G3V318 75 aa13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 M0QZ24 198 aa13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 PF4V1P10720 104 aa13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 DEFA4P12838 97 aa13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 PSMB6P28072 239 aa13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 CDX1P47902 265 aaPredicted RBP13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 RAB9AP51151 201 aa13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 ZNF329Q86UD4 541 aa13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 C12orf45Q8N5I9 185 aaPredicted RBP13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 OR1S1Q8NH92 325 aa13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 TAF15Q92804 592 aaKnown RBP eCLIP13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 GPR146Q96CH1 333 aa13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 UBE2E2Q96LR5 201 aa13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 ZNF355PQ9NSJ1 428 aa13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 CACNG5Q9UF02 275 aa13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 FBXO7Q9Y3I1 522 aa13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 TNCP24821 2201 aa13.72□□□□□ -0.21
CLSTN3-210ENST00000540931 MEGF8Q7Z7M0 2845 aa13.71□□□□□ -0.21
CLSTN3-210ENST00000540931 FAM223BA6NKX1 122 aa13.71□□□□□ -0.21
CLSTN3-210ENST00000540931 TEX22C9J3V5 150 aa13.71□□□□□ -0.21
CLSTN3-210ENST00000540931 SNCAP37840 140 aa13.71□□□□□ -0.21
CLSTN3-210ENST00000540931 C2orf68Q2NKX9 166 aa13.71□□□□□ -0.21
CLSTN3-210ENST00000540931 KLK9Q2XQG4 91 aa13.71□□□□□ -0.21
CLSTN3-210ENST00000540931 FAM223AQ8IWN6 122 aa13.71□□□□□ -0.21
CLSTN3-210ENST00000540931 HINT2Q9BX68 163 aa13.71□□□□□ -0.21
CLSTN3-210ENST00000540931 HIPK2Q9H2X6 1198 aa13.71□□□□□ -0.21
CLSTN3-210ENST00000540931 KLK9Q9UKQ9 250 aa13.71□□□□□ -0.21
CLSTN3-210ENST00000540931 NSG2Q9Y328 171 aa13.71□□□□□ -0.21
CLSTN3-210ENST00000540931 CORTO00230 105 aa13.7□□□□□ -0.22
CLSTN3-210ENST00000540931 ST8SIA3O43173 380 aa13.7□□□□□ -0.22
CLSTN3-210ENST00000540931 CTRB1P17538 263 aa13.7□□□□□ -0.22
CLSTN3-210ENST00000540931 GGNBP1Q5YKI7 109 aa13.7□□□□□ -0.22
CLSTN3-210ENST00000540931 CTRB2Q6GPI1 263 aa13.7□□□□□ -0.22
CLSTN3-210ENST00000540931 NECAP1Q8NC96 275 aa13.7□□□□□ -0.22
CLSTN3-210ENST00000540931 OR4F17Q8NGA8 305 aa13.7□□□□□ -0.22
CLSTN3-210ENST00000540931 CIB3Q96Q77 187 aaPredicted RBP13.7□□□□□ -0.22
CLSTN3-210ENST00000540931 OR4F4Q96R69 305 aa13.7□□□□□ -0.22
CLSTN3-210ENST00000540931 PLXNB1O43157 2135 aa13.69□□□□□ -0.22
CLSTN3-210ENST00000540931 C13orf42A0A1B0GVH6 325 aa13.69□□□□□ -0.22
CLSTN3-210ENST00000540931 IGLC7A0M8Q6 106 aa13.69□□□□□ -0.22
CLSTN3-210ENST00000540931 DBX1A6NMT0 343 aa13.69□□□□□ -0.22
CLSTN3-210ENST00000540931 TRGV3P03979 118 aa13.69□□□□□ -0.22
CLSTN3-210ENST00000540931 HOXB5P09067 269 aa13.69□□□□□ -0.22
CLSTN3-210ENST00000540931 OR13C7P0DN81 318 aa13.69□□□□□ -0.22
CLSTN3-210ENST00000540931 HOXA1P49639 335 aaPredicted RBP13.69□□□□□ -0.22
CLSTN3-210ENST00000540931 RPP30P78346 268 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-210ENST00000540931 C10orf55Q5SWW7 151 aa13.69□□□□□ -0.22
CLSTN3-210ENST00000540931 ZNF114Q8NC26 417 aa13.69□□□□□ -0.22
CLSTN3-210ENST00000540931 OR5T1Q8NG75 326 aa13.69□□□□□ -0.22
CLSTN3-210ENST00000540931 OR1P1Q8NH06 330 aa13.69□□□□□ -0.22
CLSTN3-210ENST00000540931 MYOZ3Q8TDC0 251 aa13.69□□□□□ -0.22
CLSTN3-210ENST00000540931 HSPB7Q9UBY9 170 aa13.69□□□□□ -0.22
CLSTN3-210ENST00000540931 CEBPZOSA8MTT3 80 aa13.68□□□□□ -0.22
CLSTN3-210ENST00000540931 CD28P10747 220 aa13.68□□□□□ -0.22
CLSTN3-210ENST00000540931 HTR2BP41595 481 aa13.68□□□□□ -0.22
CLSTN3-210ENST00000540931 TPPP2P59282 170 aa13.68□□□□□ -0.22
CLSTN3-210ENST00000540931 RPL23AP62750 156 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms