RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 RIMBP3BA6NNM3 1639 aa2.17□□□□□ -2.06
PRKDC-208ENST00000536710 RIMBP3Q9UFD9 1639 aa2.17□□□□□ -2.06
PRKDC-208ENST00000536710 DICER1Q9UPY3 1922 aaKnown RBP2.17□□□□□ -2.06
PRKDC-208ENST00000536710 PCNX2A6NKB5 2137 aa2.17□□□□□ -2.06
PRKDC-208ENST00000536710 SIGLEC16A6NMB1 481 aa2.17□□□□□ -2.06
PRKDC-208ENST00000536710 CHP2O43745 196 aa2.17□□□□□ -2.06
PRKDC-208ENST00000536710 GPX1P07203 203 aa2.17□□□□□ -2.06
PRKDC-208ENST00000536710 MSMBP08118 114 aa2.17□□□□□ -2.06
PRKDC-208ENST00000536710 RPL18Q07020 188 aaKnown RBP2.17□□□□□ -2.06
PRKDC-208ENST00000536710 KRTAP13-4Q3LI77 160 aa2.17□□□□□ -2.06
PRKDC-208ENST00000536710 TMEM155Q4W5P6 130 aa2.17□□□□□ -2.06
PRKDC-208ENST00000536710 SYPL2Q5VXT5 272 aa2.17□□□□□ -2.06
PRKDC-208ENST00000536710 Q6ZS49 121 aa2.17□□□□□ -2.06
PRKDC-208ENST00000536710 RPP25LQ8N5L8 163 aaKnown RBP2.17□□□□□ -2.06
PRKDC-208ENST00000536710 ULBP3Q9BZM4 244 aa2.17□□□□□ -2.06
PRKDC-208ENST00000536710 OR8D2Q9GZM6 311 aa2.17□□□□□ -2.06
PRKDC-208ENST00000536710 C8orf4Q9NR00 106 aa2.17□□□□□ -2.06
PRKDC-208ENST00000536710 FLT4P35916 1363 aa2.17□□□□□ -2.06
PRKDC-208ENST00000536710 PLB1Q6P1J6 1458 aa2.17□□□□□ -2.06
PRKDC-208ENST00000536710 MYO9BQ13459 2157 aa2.17□□□□□ -2.06
PRKDC-208ENST00000536710 DNMBPQ6XZF7 1577 aa2.16□□□□□ -2.06
PRKDC-208ENST00000536710 VWDEQ8N2E2 1590 aa2.16□□□□□ -2.06
PRKDC-208ENST00000536710 CCDC88BA6NC98 1476 aa2.16□□□□□ -2.06
PRKDC-208ENST00000536710 HLA-DRB1P01911 266 aa2.16□□□□□ -2.06
PRKDC-208ENST00000536710 PRM2P04554 102 aa2.16□□□□□ -2.06
PRKDC-208ENST00000536710 EIF2B2P49770 351 aaKnown RBP2.16□□□□□ -2.06
PRKDC-208ENST00000536710 ACOT6Q3I5F7 207 aaPredicted RBP2.16□□□□□ -2.06
PRKDC-208ENST00000536710 TMEM42Q69YG0 159 aa2.16□□□□□ -2.06
PRKDC-208ENST00000536710 SLC36A1Q7Z2H8 476 aa2.16□□□□□ -2.06
PRKDC-208ENST00000536710 LRRC25Q8N386 305 aaPredicted RBP2.16□□□□□ -2.06
PRKDC-208ENST00000536710 ANKRD29Q8N6D5 301 aa2.16□□□□□ -2.06
PRKDC-208ENST00000536710 C8orf76Q96K31 380 aa2.16□□□□□ -2.06
PRKDC-208ENST00000536710 COMMD5Q9GZQ3 224 aa2.16□□□□□ -2.06
PRKDC-208ENST00000536710 CHST6Q9GZX3 395 aa2.16□□□□□ -2.06
PRKDC-208ENST00000536710 UCK1Q9HA47 277 aa2.16□□□□□ -2.06
PRKDC-208ENST00000536710 TOPBP1Q92547 1522 aa2.16□□□□□ -2.06
PRKDC-208ENST00000536710 SLX4Q8IY92 1834 aa2.15□□□□□ -2.06
PRKDC-208ENST00000536710 ATG2BQ96BY7 2078 aa2.15□□□□□ -2.07
PRKDC-208ENST00000536710 A0A0D9SEW6 157 aa2.15□□□□□ -2.07
PRKDC-208ENST00000536710 SLC22A1O15245 554 aa2.15□□□□□ -2.07
PRKDC-208ENST00000536710 IGHV3-7P01780 117 aa2.15□□□□□ -2.07
PRKDC-208ENST00000536710 AQP4P55087 323 aa2.15□□□□□ -2.07
PRKDC-208ENST00000536710 DEFA1P59665 94 aa2.15□□□□□ -2.07
PRKDC-208ENST00000536710 SNRPD2P62316 118 aaKnown RBP2.15□□□□□ -2.07
PRKDC-208ENST00000536710 KCNJ8Q15842 424 aa2.15□□□□□ -2.07
PRKDC-208ENST00000536710 SPOPLQ6IQ16 392 aa2.15□□□□□ -2.07
PRKDC-208ENST00000536710 TMEM86AQ8N2M4 240 aa2.15□□□□□ -2.07
PRKDC-208ENST00000536710 SPACA4Q8TDM5 124 aa2.15□□□□□ -2.07
PRKDC-208ENST00000536710 PRTFDC1Q9NRG1 225 aa2.15□□□□□ -2.07
PRKDC-208ENST00000536710 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.15□□□□□ -2.07
PRKDC-208ENST00000536710 NAV1Q8NEY1 1877 aa2.15□□□□□ -2.07
PRKDC-208ENST00000536710 CLASP1Q7Z460 1538 aa2.15□□□□□ -2.07
PRKDC-208ENST00000536710 PBRM1Q86U86 1689 aa2.15□□□□□ -2.07
PRKDC-208ENST00000536710 IFT140Q96RY7 1462 aa2.14□□□□□ -2.07
PRKDC-208ENST00000536710 ABCA5Q8WWZ7 1642 aa2.14□□□□□ -2.07
PRKDC-208ENST00000536710 ARHGEF11O15085 1522 aa2.14□□□□□ -2.07
PRKDC-208ENST00000536710 FABP5P3A8MUU1 101 aa2.14□□□□□ -2.07
PRKDC-208ENST00000536710 TMEM114B3SHH9 223 aa2.14□□□□□ -2.07
PRKDC-208ENST00000536710 KPNA3O00505 521 aaPredicted RBP2.14□□□□□ -2.07
PRKDC-208ENST00000536710 ORC5O43913 435 aa2.14□□□□□ -2.07
PRKDC-208ENST00000536710 SERPINA7P05543 415 aa2.14□□□□□ -2.07
PRKDC-208ENST00000536710 TRGC1P0CF51 173 aa2.14□□□□□ -2.07
PRKDC-208ENST00000536710 HIST1H1TP22492 207 aaPredicted RBP2.14□□□□□ -2.07
PRKDC-208ENST00000536710 RPL5P46777 297 aaKnown RBP2.14□□□□□ -2.07
PRKDC-208ENST00000536710 EVX1P49640 407 aa2.14□□□□□ -2.07
PRKDC-208ENST00000536710 HBA1P69905 142 aa2.14□□□□□ -2.07
PRKDC-208ENST00000536710 MCFD2Q8NI22 146 aa2.14□□□□□ -2.07
PRKDC-208ENST00000536710 MRPL30Q8TCC3 161 aaKnown RBP2.14□□□□□ -2.07
PRKDC-208ENST00000536710 ZNF625Q96I27 306 aaPredicted RBP2.14□□□□□ -2.07
PRKDC-208ENST00000536710 CST9LQ9H4G1 147 aa2.14□□□□□ -2.07
PRKDC-208ENST00000536710 ABCC8Q09428 1581 aa2.14□□□□□ -2.07
PRKDC-208ENST00000536710 POLA1P09884 1462 aaPredicted RBP2.14□□□□□ -2.07
PRKDC-208ENST00000536710 BIVM-ERCC5R4GMW8 1640 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 IRGMA1A4Y4 181 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 FAAHO00519 579 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 C1QAP02745 245 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 C1QCP02747 245 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 TCRBP04435 133 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 HIST1H2BOP23527 126 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 HIST1H2BBP33778 126 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 HIST1H2BDP58876 126 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 LSM6P62312 80 aaKnown RBP2.13□□□□□ -2.07
PRKDC-208ENST00000536710 HIST1H2BCP62807 126 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 CCL20P78556 96 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 HIST2H2BEQ16778 126 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.13□□□□□ -2.07
PRKDC-208ENST00000536710 FAM27BQ5VT28 67 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 AADACL3Q5VUY0 350 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 COA5Q86WW8 74 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 DYNAPQ8N1N2 210 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 C10orf126Q8N4M7 172 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 HIST1H2BHQ93079 126 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 ITFG2Q969R8 447 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 HIST1H2BNQ99877 126 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 HIST1H2BMQ99879 126 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 DOK5Q9P104 306 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 ARAP1Q96P48 1450 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 SHROOM2Q13796 1616 aa2.13□□□□□ -2.07
PRKDC-208ENST00000536710 CUX1P39880 1505 aa2.12□□□□□ -2.07
PRKDC-208ENST00000536710 ZNF737O75373 536 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms