RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 ODF3BA8MYP8 253 aa15.22■□□□□ 0.03
VPS28-207ENST00000526977 UPK2O00526 184 aa15.22■□□□□ 0.03
VPS28-207ENST00000526977 SFTA3P0C7M3 94 aa15.22■□□□□ 0.03
VPS28-207ENST00000526977 RPP30P78346 268 aaKnown RBP15.22■□□□□ 0.03
VPS28-207ENST00000526977 PEA15Q15121 130 aa15.22■□□□□ 0.03
VPS28-207ENST00000526977 VWC2Q2TAL6 325 aa15.22■□□□□ 0.03
VPS28-207ENST00000526977 TGIF2LXQ8IUE1 241 aa15.22■□□□□ 0.03
VPS28-207ENST00000526977 LFNGQ8NES3 379 aa15.22■□□□□ 0.03
VPS28-207ENST00000526977 NABP2Q9BQ15 211 aa15.22■□□□□ 0.03
VPS28-207ENST00000526977 VSIRQ9H7M9 311 aa15.22■□□□□ 0.03
VPS28-207ENST00000526977 DNASE2O00115 360 aaPredicted RBP15.22■□□□□ 0.03
VPS28-207ENST00000526977 RRHO14718 337 aa15.22■□□□□ 0.03
VPS28-207ENST00000526977 IFNA10P01566 189 aa15.22■□□□□ 0.03
VPS28-207ENST00000526977 APOA2P02652 100 aa15.22■□□□□ 0.03
VPS28-207ENST00000526977 HOXB4P17483 251 aaPredicted RBP15.22■□□□□ 0.03
VPS28-207ENST00000526977 CEACAM3P40198 252 aa15.22■□□□□ 0.03
VPS28-207ENST00000526977 UBE2E1P51965 193 aa15.22■□□□□ 0.03
VPS28-207ENST00000526977 SFT2D1Q8WV19 159 aa15.22■□□□□ 0.03
VPS28-207ENST00000526977 AIFM2Q9BRQ8 373 aa15.22■□□□□ 0.03
VPS28-207ENST00000526977 EIF5A2Q9GZV4 153 aaKnown RBP15.22■□□□□ 0.03
VPS28-207ENST00000526977 DPM3Q9P2X0 92 aa15.22■□□□□ 0.03
VPS28-207ENST00000526977 H7C2Y5 167 aa15.21■□□□□ 0.03
VPS28-207ENST00000526977 NUPL2O15504 423 aaKnown RBP15.21■□□□□ 0.03
VPS28-207ENST00000526977 MYOD1P15172 320 aa15.21■□□□□ 0.03
VPS28-207ENST00000526977 KLRD1Q13241 179 aa15.21■□□□□ 0.03
VPS28-207ENST00000526977 OSR1Q8TAX0 266 aaPredicted RBP15.21■□□□□ 0.03
VPS28-207ENST00000526977 HIF1ANQ9NWT6 349 aa15.21■□□□□ 0.03
VPS28-207ENST00000526977 TIMM9Q9Y5J7 89 aa15.21■□□□□ 0.03
VPS28-207ENST00000526977 OR51B2Q9Y5P1 312 aa15.21■□□□□ 0.03
VPS28-207ENST00000526977 HECTD1Q9ULT8 2610 aa15.21■□□□□ 0.03
VPS28-207ENST00000526977 MAP1AP78559 2803 aaPredicted RBP15.21■□□□□ 0.03
VPS28-207ENST00000526977 TET2Q6N021 2002 aaPredicted RBP15.21■□□□□ 0.02
VPS28-207ENST00000526977 A0A1B0GW64 132 aa15.21■□□□□ 0.02
VPS28-207ENST00000526977 LY6LH3BQJ8 138 aa15.21■□□□□ 0.02
VPS28-207ENST00000526977 MDKP21741 143 aaPredicted RBP15.21■□□□□ 0.02
VPS28-207ENST00000526977 TMEM177Q53S58 311 aa15.21■□□□□ 0.02
VPS28-207ENST00000526977 TMEM170AQ8WVE7 144 aa15.21■□□□□ 0.02
VPS28-207ENST00000526977 LHX4Q969G2 390 aa15.21■□□□□ 0.02
VPS28-207ENST00000526977 RPEQ96AT9 228 aa15.21■□□□□ 0.02
VPS28-207ENST00000526977 PRNDQ9UKY0 176 aa15.21■□□□□ 0.02
VPS28-207ENST00000526977 BTBD17A6NE02 478 aa15.2■□□□□ 0.02
VPS28-207ENST00000526977 HOXA1P49639 335 aaPredicted RBP15.2■□□□□ 0.02
VPS28-207ENST00000526977 LGALS4P56470 323 aa15.2■□□□□ 0.02
VPS28-207ENST00000526977 MINOS1Q5TGZ0 78 aa15.2■□□□□ 0.02
VPS28-207ENST00000526977 FLYWCH2Q96CP2 140 aaKnown RBP15.2■□□□□ 0.02
VPS28-207ENST00000526977 BET1LQ9NYM9 111 aa15.2■□□□□ 0.02
VPS28-207ENST00000526977 MINOS1-NBL1R4GNA1 71 aa15.2■□□□□ 0.02
VPS28-207ENST00000526977 WNK2Q9Y3S1 2297 aa15.2■□□□□ 0.02
VPS28-207ENST00000526977 FAM74A7A6NL05 159 aa15.19■□□□□ 0.02
VPS28-207ENST00000526977 KBTBD11O94819 623 aa15.19■□□□□ 0.02
VPS28-207ENST00000526977 SCAF4O95104 1147 aaKnown RBP15.19■□□□□ 0.02
VPS28-207ENST00000526977 SAA1P0DJI8 122 aaPredicted RBP15.19■□□□□ 0.02
VPS28-207ENST00000526977 FGF7P21781 194 aa15.19■□□□□ 0.02
VPS28-207ENST00000526977 MC5RP33032 325 aa15.19■□□□□ 0.02
VPS28-207ENST00000526977 HNF4GQ14541 408 aa15.19■□□□□ 0.02
VPS28-207ENST00000526977 TMEM249Q2WGJ8 235 aa15.19■□□□□ 0.02
VPS28-207ENST00000526977 FAM74A3Q4VXF1 159 aa15.19■□□□□ 0.02
VPS28-207ENST00000526977 ETV3LQ6ZN32 361 aa15.19■□□□□ 0.02
VPS28-207ENST00000526977 PBDC1Q9BVG4 233 aa15.19■□□□□ 0.02
VPS28-207ENST00000526977 C7orf69Q9H7B7 122 aa15.19■□□□□ 0.02
VPS28-207ENST00000526977 ZNF257Q9Y2Q1 563 aa15.19■□□□□ 0.02
VPS28-207ENST00000526977 TRAV1-1A0A0B4J248 108 aa15.19■□□□□ 0.02
VPS28-207ENST00000526977 ZNF726P1Q15940 193 aa15.19■□□□□ 0.02
VPS28-207ENST00000526977 WFDC11Q8NEX6 87 aa15.19■□□□□ 0.02
VPS28-207ENST00000526977 RARRES2Q99969 163 aa15.19■□□□□ 0.02
VPS28-207ENST00000526977 TBL2Q9Y4P3 447 aaKnown RBP15.19■□□□□ 0.02
VPS28-207ENST00000526977 ABCA2Q9BZC7 2435 aa15.18■□□□□ 0.02
VPS28-207ENST00000526977 ITPR2Q14571 2701 aa15.18■□□□□ 0.02
VPS28-207ENST00000526977 TEX50A0A1B0GTY4 177 aa15.18■□□□□ 0.02
VPS28-207ENST00000526977 RBFOX3A6NFN3 312 aa15.18■□□□□ 0.02
VPS28-207ENST00000526977 PRSS46E5RG02 174 aa15.18■□□□□ 0.02
VPS28-207ENST00000526977 PPT1P50897 306 aa15.18■□□□□ 0.02
VPS28-207ENST00000526977 TMEM41BQ5BJD5 291 aa15.18■□□□□ 0.02
VPS28-207ENST00000526977 TPTE2P1Q5T6R2 138 aa15.18■□□□□ 0.02
VPS28-207ENST00000526977 MAPK1IP1LQ8NDC0 245 aa15.18■□□□□ 0.02
VPS28-207ENST00000526977 OR4C13Q8NGP0 309 aa15.18■□□□□ 0.02
VPS28-207ENST00000526977 MBD3L1Q8WWY6 194 aa15.18■□□□□ 0.02
VPS28-207ENST00000526977 HARBI1Q96MB7 349 aa15.18■□□□□ 0.02
VPS28-207ENST00000526977 PDZD2O15018 2839 aa15.18■□□□□ 0.02
VPS28-207ENST00000526977 OOSP1A8MZH6 123 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 J3QLI3 93 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 TSPAN4O14817 238 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 TGFAP01135 160 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 HBE1P02100 147 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 CD1BP29016 333 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 ELLP55199 621 aaPredicted RBP15.17■□□□□ 0.02
VPS28-207ENST00000526977 PDPNQ86YL7 162 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 KIAA1456Q9P272 454 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 IGHV1-3A0A0C4DH29 117 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 CENPVL3A0A0U1RRI6 287 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 SNAPINO95295 136 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 OPN1MWP04001 364 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 OPN1MW2P0DN77 364 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 OPN1MW3P0DN78 364 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 IGHV4-31P0DP07 118 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 NPBWR1P48145 328 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 RAB13P51153 203 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 ACSM6Q6P461 480 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 GGACTQ9BVM4 153 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 HINT2Q9BX68 163 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms