RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 UBE2AP49459 152 aa7.52□□□□□ -1.21
VCAN-208ENST00000512590 EWSR1Q01844 656 aaKnown RBP eCLIP7.52□□□□□ -1.21
VCAN-208ENST00000512590 MST1LQ2TV78 715 aa7.52□□□□□ -1.21
VCAN-208ENST00000512590 ZNF329Q86UD4 541 aa7.52□□□□□ -1.21
VCAN-208ENST00000512590 FAM24BQ8N5W8 94 aa7.52□□□□□ -1.21
VCAN-208ENST00000512590 C17orf47Q8NEP4 570 aa7.52□□□□□ -1.21
VCAN-208ENST00000512590 GTF3AQ92664 365 aaKnown RBP7.52□□□□□ -1.21
VCAN-208ENST00000512590 FGF20Q9NP95 211 aaPredicted RBP7.52□□□□□ -1.21
VCAN-208ENST00000512590 PRR13Q9NZ81 148 aa7.52□□□□□ -1.21
VCAN-208ENST00000512590 SIGLEC1Q9BZZ2 1709 aa7.52□□□□□ -1.21
VCAN-208ENST00000512590 RFLNBQ8N5W9 214 aa7.52□□□□□ -1.21
VCAN-208ENST00000512590 PIK3C2AO00443 1686 aa7.52□□□□□ -1.21
VCAN-208ENST00000512590 APC2O95996 2303 aa7.52□□□□□ -1.21
VCAN-208ENST00000512590 PGPEP1LA6NFU8 196 aa7.52□□□□□ -1.21
VCAN-208ENST00000512590 CTAG2O75638 210 aa7.52□□□□□ -1.21
VCAN-208ENST00000512590 MMP23AO75900 390 aa7.52□□□□□ -1.21
VCAN-208ENST00000512590 RPL18AQ02543 176 aaKnown RBP7.52□□□□□ -1.21
VCAN-208ENST00000512590 FER1L6-AS1Q8NA97 138 aa7.52□□□□□ -1.21
VCAN-208ENST00000512590 ASCL2Q99929 193 aa7.52□□□□□ -1.21
VCAN-208ENST00000512590 SETD1AO15047 1707 aaKnown RBP7.52□□□□□ -1.21
VCAN-208ENST00000512590 FAM74A7A6NL05 159 aa7.52□□□□□ -1.21
VCAN-208ENST00000512590 F6UB75 175 aa7.52□□□□□ -1.21
VCAN-208ENST00000512590 GATA2P23769 480 aaPredicted RBP7.52□□□□□ -1.21
VCAN-208ENST00000512590 TMEM174Q8WUU8 243 aa7.52□□□□□ -1.21
VCAN-208ENST00000512590 IGHV2OR16-5A0A0B4J2B6 119 aa7.51□□□□□ -1.21
VCAN-208ENST00000512590 ODF1Q14990 250 aa7.51□□□□□ -1.21
VCAN-208ENST00000512590 ATG4DQ86TL0 474 aaPredicted RBP7.51□□□□□ -1.21
VCAN-208ENST00000512590 C19orf24Q9BVV8 132 aa7.51□□□□□ -1.21
VCAN-208ENST00000512590 CHD4Q14839 1912 aa7.51□□□□□ -1.21
VCAN-208ENST00000512590 PAPPA2Q9BXP8 1791 aa7.51□□□□□ -1.21
VCAN-208ENST00000512590 HOXA6P31267 233 aa7.51□□□□□ -1.21
VCAN-208ENST00000512590 ZNF672Q499Z4 452 aaPredicted RBP7.51□□□□□ -1.21
VCAN-208ENST00000512590 C9orf66Q5T8R8 295 aa7.51□□□□□ -1.21
VCAN-208ENST00000512590 VN1R4Q7Z5H5 301 aa7.51□□□□□ -1.21
VCAN-208ENST00000512590 ZNF414Q96IQ9 312 aa7.51□□□□□ -1.21
VCAN-208ENST00000512590 PEAK1Q9H792 1746 aa7.51□□□□□ -1.21
VCAN-208ENST00000512590 FAM90A2PQ658T7 463 aa7.51□□□□□ -1.21
VCAN-208ENST00000512590 PRO1933Q9H354 126 aa7.51□□□□□ -1.21
VCAN-208ENST00000512590 CITO14578 2027 aa7.51□□□□□ -1.21
VCAN-208ENST00000512590 CTDSPLO15194 276 aa7.51□□□□□ -1.21
VCAN-208ENST00000512590 MSMBP08118 114 aa7.51□□□□□ -1.21
VCAN-208ENST00000512590 CELF2-AS1Q8N7Q2 184 aa7.51□□□□□ -1.21
VCAN-208ENST00000512590 PARLQ9H300 379 aa7.51□□□□□ -1.21
VCAN-208ENST00000512590 hADV29S1A0JD25 119 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 TCRAP04437 139 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 C17orf77Q96MU5 243 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 SLIRPQ9GZT3 109 aaKnown RBP7.5□□□□□ -1.21
VCAN-208ENST00000512590 TCF19Q9Y242 345 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 TRBV5-4A0A0C4DH59 114 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 M0R2P5 195 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 EFNA2O43921 213 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 CCL1P22362 96 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 RPL39P5Q59GN2 51 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 DNAJC30Q96LL9 226 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 C1orf43Q9BWL3 253 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 PILRAQ9UKJ1 303 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 ITGB1BP1O14713 200 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 LHX2P50458 406 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 PAX9P55771 341 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 ZNF625Q96I27 306 aaPredicted RBP7.5□□□□□ -1.21
VCAN-208ENST00000512590 SPOCK3Q9BQ16 436 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 MLNRO43193 412 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 NDUFB4O95168 129 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 ZNF876PQ49A33 203 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 LYZL2Q7Z4W2 148 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 LINC00312Q9Y6C7 94 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 AKAP12Q02952 1782 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 TRAV13-1A0A0B4J241 112 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 MARCH11A6NNE9 402 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 SEC11AP67812 179 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 EGR4Q05215 589 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 PSG7Q13046 419 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 ATXN8Q156A1 80 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 C9orf106Q8NAJ2 232 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 RNF133Q8WVZ7 376 aa7.5□□□□□ -1.21
VCAN-208ENST00000512590 A0A1W2PQF6 199 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 SYNJ2BPP57105 145 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 SSBP2P81877 361 aaPredicted RBP7.49□□□□□ -1.21
VCAN-208ENST00000512590 CIARTQ8N365 385 aaPredicted RBP7.49□□□□□ -1.21
VCAN-208ENST00000512590 NABP2Q9BQ15 211 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 SRXN1Q9BYN0 137 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 NAA50Q9GZZ1 169 aaKnown RBP7.49□□□□□ -1.21
VCAN-208ENST00000512590 TMEM133Q9H2Q1 129 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 A0A096LPF7 62 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 LEPROTO15243 131 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 COX5BP10606 129 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 SUPT4H1P63272 117 aaKnown RBP7.49□□□□□ -1.21
VCAN-208ENST00000512590 SMIM4Q8WVI0 70 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 XCL2Q9UBD3 114 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 NDUFA12Q9UI09 145 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 MT-ND6P03923 174 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 TCTEX1D4Q5JR98 221 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.49□□□□□ -1.21
VCAN-208ENST00000512590 IGF2BP2-AS1Q96M15 143 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 PAM16Q9Y3D7 125 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 SPEF2Q9C093 1822 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 FABP5P3A8MUU1 101 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 HRKO00198 91 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 RHODO00212 210 aa7.49□□□□□ -1.21
VCAN-208ENST00000512590 HSPB1P04792 205 aaKnown RBP7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms