RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 SNAPC5O75971 98 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 IGLV2-14P01704 120 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 REG1AP05451 166 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 TRAPPC2P0DI81 140 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 TRAPPC2BP0DI82 140 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 FXYD4P59646 89 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 OR2B8PP59922 312 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 KLK9Q2XQG4 91 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 HOGA1Q86XE5 327 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 CROCCP3Q8IVE0 287 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 GDPD1Q8N9F7 314 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 BSCL2Q96G97 398 aaPredicted RBP8.68□□□□□ -1.02
COL6A3-213ENST00000493475 TMEM56Q96MV1 263 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 YTHDF1Q9BYJ9 559 aaKnown RBP8.68□□□□□ -1.02
COL6A3-213ENST00000493475 CCL28Q9NRJ3 127 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 TMEM140Q9NV12 185 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 FKBP11Q9NYL4 201 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 MLXQ9UH92 298 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 KLK9Q9UKQ9 250 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 DMRT1Q9Y5R6 373 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 S4R3C0 116 aa8.68□□□□□ -1.02
COL6A3-213ENST00000493475 KIR2DL5BA0A0G2JN68 375 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 KIR2DL5BA0A0G2JPC4 375 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 MFSD2BA6NFX1 497 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 UPK2O00526 184 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 SPRY2O43597 315 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 LY6G6CO95867 125 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 RELQ04864 619 aaPredicted RBP8.67□□□□□ -1.02
COL6A3-213ENST00000493475 EIF4EBP1Q13541 118 aaPredicted RBP8.67□□□□□ -1.02
COL6A3-213ENST00000493475 POU2AF1Q16633 256 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 IDNKQ5T6J7 187 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 SLC25A24Q6NUK1 477 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 TMEM17Q86X19 198 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 KIR2DL5AQ8N109 375 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 OR5AP2Q8NGF4 316 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 OR1L8Q8NGR8 309 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 OR51H1Q8NH63 302 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 KIR2DL5BQ8NHK3 375 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 ZNF502Q8TBZ5 544 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 GIMAP1Q8WWP7 306 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 LSM10Q969L4 123 aaKnown RBP8.67□□□□□ -1.02
COL6A3-213ENST00000493475 CMTM3Q96MX0 182 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 TSC22D3Q99576 134 aa8.67□□□□□ -1.02
COL6A3-213ENST00000493475 NDUFA4O00483 81 aa8.66□□□□□ -1.02
COL6A3-213ENST00000493475 TSPAN4O14817 238 aa8.66□□□□□ -1.02
COL6A3-213ENST00000493475 SSX5O60225 188 aa8.66□□□□□ -1.02
COL6A3-213ENST00000493475 C8orf88P0DMB2 117 aa8.66□□□□□ -1.02
COL6A3-213ENST00000493475 OR13C7P0DN81 318 aa8.66□□□□□ -1.02
COL6A3-213ENST00000493475 ATF4P18848 351 aaPredicted RBP8.66□□□□□ -1.02
COL6A3-213ENST00000493475 TAS2R46P59540 309 aa8.66□□□□□ -1.02
COL6A3-213ENST00000493475 MXD1Q05195 221 aa8.66□□□□□ -1.02
COL6A3-213ENST00000493475 TNFRSF9Q07011 255 aa8.66□□□□□ -1.02
COL6A3-213ENST00000493475 PMS2P11Q13670 270 aa8.66□□□□□ -1.02
COL6A3-213ENST00000493475 NR2C2APQ86WQ0 139 aa8.66□□□□□ -1.02
COL6A3-213ENST00000493475 WFDC3Q8IUB2 231 aa8.66□□□□□ -1.02
COL6A3-213ENST00000493475 SPARTQ8N0X7 666 aa8.66□□□□□ -1.02
COL6A3-213ENST00000493475 TMEM190Q8WZ59 177 aa8.66□□□□□ -1.02
COL6A3-213ENST00000493475 S100A16Q96FQ6 103 aaKnown RBP8.66□□□□□ -1.02
COL6A3-213ENST00000493475 OVOL2Q9BRP0 275 aa8.66□□□□□ -1.02
COL6A3-213ENST00000493475 C20orf24Q9BUV8 137 aa8.66□□□□□ -1.02
COL6A3-213ENST00000493475 HINT2Q9BX68 163 aa8.66□□□□□ -1.02
COL6A3-213ENST00000493475 ZNF436Q9C0F3 470 aaPredicted RBP8.66□□□□□ -1.02
COL6A3-213ENST00000493475 C21orf62Q9NYP8 219 aa8.66□□□□□ -1.02
COL6A3-213ENST00000493475 PRNDQ9UKY0 176 aa8.66□□□□□ -1.02
COL6A3-213ENST00000493475 STARD9Q9P2P6 4700 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 LYSTQ99698 3801 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 SACSQ9NZJ4 4579 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 LOC100506127A0A0U1RQW1 187 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 IGLC7A0M8Q6 106 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 OR2T8A6NH00 312 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 MARCH11A6NNE9 402 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 E7EUB6 86 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 NUPL2O15504 423 aaKnown RBP8.65□□□□□ -1.02
COL6A3-213ENST00000493475 CD5P06127 495 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 EIF4EP06730 217 aaKnown RBP8.65□□□□□ -1.02
COL6A3-213ENST00000493475 SERPINE2P07093 398 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 F2RP25116 425 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 SDC2P34741 201 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 PAFAH1B2P68402 229 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 Q56UQ5 140 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 LPCAT3Q6P1A2 487 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 UNQ9165/PRO28630Q6UXU0 137 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 C19orf35Q6ZS72 473 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 UBAC2Q8NBM4 344 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 OR5B3Q8NH48 314 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 LINC00476Q8WZB0 136 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 AUNIPQ9H7T9 357 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 EHFQ9NZC4 300 aa8.65□□□□□ -1.02
COL6A3-213ENST00000493475 K7EMT4 169 aa8.64□□□□□ -1.03
COL6A3-213ENST00000493475 SCGB2A1O75556 95 aa8.64□□□□□ -1.03
COL6A3-213ENST00000493475 S1PR2O95136 353 aa8.64□□□□□ -1.03
COL6A3-213ENST00000493475 DEFB135Q30KP9 77 aa8.64□□□□□ -1.03
COL6A3-213ENST00000493475 ZNF818PQ6ZRF7 136 aa8.64□□□□□ -1.03
COL6A3-213ENST00000493475 LYG2Q86SG7 212 aa8.64□□□□□ -1.03
COL6A3-213ENST00000493475 CADM3Q8N126 398 aa8.64□□□□□ -1.03
COL6A3-213ENST00000493475 CENPSQ8N2Z9 138 aa8.64□□□□□ -1.03
COL6A3-213ENST00000493475 GVQW1Q8N7I0 195 aa8.64□□□□□ -1.03
COL6A3-213ENST00000493475 OR5H2Q8NGV7 314 aa8.64□□□□□ -1.03
COL6A3-213ENST00000493475 GALNT14Q96FL9 552 aa8.64□□□□□ -1.03
COL6A3-213ENST00000493475 GPHA2Q96T91 129 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms