RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 COMMD5Q9GZQ3 224 aa12.53□□□□□ -0.4
USP40-212ENST00000473191 HYDINQ4G0P3 5121 aa12.52□□□□□ -0.4
USP40-212ENST00000473191 MARCH11A6NNE9 402 aa12.52□□□□□ -0.41
USP40-212ENST00000473191 HPGDSO60760 199 aa12.52□□□□□ -0.41
USP40-212ENST00000473191 KRASP01116 189 aa12.52□□□□□ -0.41
USP40-212ENST00000473191 F2RP25116 425 aa12.52□□□□□ -0.41
USP40-212ENST00000473191 PRSS3P35030 304 aa12.52□□□□□ -0.41
USP40-212ENST00000473191 FAM209BQ5JX69 171 aa12.52□□□□□ -0.41
USP40-212ENST00000473191 SNX29P2Q8IUI4 249 aa12.52□□□□□ -0.41
USP40-212ENST00000473191 UXS1Q8NBZ7 420 aa12.52□□□□□ -0.41
USP40-212ENST00000473191 DGCR14Q96DF8 476 aaKnown RBP12.52□□□□□ -0.41
USP40-212ENST00000473191 QTRT1Q9BXR0 403 aaKnown RBP12.52□□□□□ -0.41
USP40-212ENST00000473191 HIPK2Q9H2X6 1198 aa12.52□□□□□ -0.41
USP40-212ENST00000473191 CEPT1Q9Y6K0 416 aa12.52□□□□□ -0.41
USP40-212ENST00000473191 TENM2Q9NT68 2774 aa12.52□□□□□ -0.41
USP40-212ENST00000473191 SCAF4O95104 1147 aaKnown RBP12.51□□□□□ -0.41
USP40-212ENST00000473191 DHFRP00374 187 aa12.51□□□□□ -0.41
USP40-212ENST00000473191 OR13C7P0DN81 318 aa12.51□□□□□ -0.41
USP40-212ENST00000473191 HIST1H1BP16401 226 aaKnown RBP12.51□□□□□ -0.41
USP40-212ENST00000473191 ELK1P19419 428 aa12.51□□□□□ -0.41
USP40-212ENST00000473191 RNASE12Q5GAN4 147 aaKnown RBP12.51□□□□□ -0.41
USP40-212ENST00000473191 BTNL8Q6UX41 500 aa12.51□□□□□ -0.41
USP40-212ENST00000473191 AIFM2Q9BRQ8 373 aa12.51□□□□□ -0.41
USP40-212ENST00000473191 SRD5A3Q9H8P0 318 aa12.51□□□□□ -0.41
USP40-212ENST00000473191 NDUFA4L2Q9NRX3 87 aa12.51□□□□□ -0.41
USP40-212ENST00000473191 COMMD9Q9P000 198 aa12.51□□□□□ -0.41
USP40-212ENST00000473191 TRBV7-1A0A0A6YYK4 115 aa12.5□□□□□ -0.41
USP40-212ENST00000473191 A8MWP6 167 aa12.5□□□□□ -0.41
USP40-212ENST00000473191 OR11H12B2RN74 326 aa12.5□□□□□ -0.41
USP40-212ENST00000473191 F8W735 103 aaPredicted RBP12.5□□□□□ -0.41
USP40-212ENST00000473191 GPR31O00270 319 aa12.5□□□□□ -0.41
USP40-212ENST00000473191 TPPPO94811 219 aa12.5□□□□□ -0.41
USP40-212ENST00000473191 IGKV1-39P01597 117 aa12.5□□□□□ -0.41
USP40-212ENST00000473191 IGKV1D-39P04432 117 aa12.5□□□□□ -0.41
USP40-212ENST00000473191 TAS2R46P59540 309 aa12.5□□□□□ -0.41
USP40-212ENST00000473191 OR6F1Q8NGZ6 308 aa12.5□□□□□ -0.41
USP40-212ENST00000473191 CD300LFQ8TDQ1 290 aa12.5□□□□□ -0.41
USP40-212ENST00000473191 ZNF414Q96IQ9 312 aa12.5□□□□□ -0.41
USP40-212ENST00000473191 HINT2Q9BX68 163 aa12.5□□□□□ -0.41
USP40-212ENST00000473191 VCX3AQ9NNX9 186 aa12.5□□□□□ -0.41
USP40-212ENST00000473191 SLC2A8Q9NY64 477 aa12.5□□□□□ -0.41
USP40-212ENST00000473191 IGHV3OR16-8A0A075B7F1 116 aa12.49□□□□□ -0.41
USP40-212ENST00000473191 OR2T8A6NH00 312 aa12.49□□□□□ -0.41
USP40-212ENST00000473191 SERPINE2P07093 398 aa12.49□□□□□ -0.41
USP40-212ENST00000473191 TRAPPC2P0DI81 140 aa12.49□□□□□ -0.41
USP40-212ENST00000473191 TRAPPC2BP0DI82 140 aa12.49□□□□□ -0.41
USP40-212ENST00000473191 SMIM18P0DKX4 95 aa12.49□□□□□ -0.41
USP40-212ENST00000473191 FAM106AQ4KMX7 169 aa12.49□□□□□ -0.41
USP40-212ENST00000473191 ZNF57Q68EA5 555 aaPredicted RBP12.49□□□□□ -0.41
USP40-212ENST00000473191 SLC25A24Q6NUK1 477 aa12.49□□□□□ -0.41
USP40-212ENST00000473191 LAX1Q8IWV1 398 aa12.49□□□□□ -0.41
USP40-212ENST00000473191 GDPD1Q8N9F7 314 aa12.49□□□□□ -0.41
USP40-212ENST00000473191 ISOC1Q96CN7 298 aa12.49□□□□□ -0.41
USP40-212ENST00000473191 CXorf58Q96LI9 332 aa12.49□□□□□ -0.41
USP40-212ENST00000473191 PALMDQ9NP74 551 aa12.49□□□□□ -0.41
USP40-212ENST00000473191 TECRQ9NZ01 308 aaKnown RBP12.49□□□□□ -0.41
USP40-212ENST00000473191 OR51B2Q9Y5P1 312 aa12.49□□□□□ -0.41
USP40-212ENST00000473191 M0QYG6 137 aa12.48□□□□□ -0.41
USP40-212ENST00000473191 APOA1P02647 267 aa12.48□□□□□ -0.41
USP40-212ENST00000473191 PTBP1P26599 531 aaKnown RBP eCLIP12.48□□□□□ -0.412e-7■■■■□ 23.9
USP40-212ENST00000473191 ERVK-16P61578 105 aa12.48□□□□□ -0.41
USP40-212ENST00000473191 PLET1Q6UQ28 207 aa12.48□□□□□ -0.41
USP40-212ENST00000473191 TBC1D26Q86UD7 250 aa12.48□□□□□ -0.41
USP40-212ENST00000473191 OR1L8Q8NGR8 309 aa12.48□□□□□ -0.41
USP40-212ENST00000473191 SRSF8Q9BRL6 282 aaKnown RBP12.48□□□□□ -0.41
USP40-212ENST00000473191 CHRDL1Q9BU40 450 aa12.48□□□□□ -0.41
USP40-212ENST00000473191 DNAH1Q9P2D7 4330 aa12.48□□□□□ -0.41
USP40-212ENST00000473191 K7EIM0 57 aa12.47□□□□□ -0.41
USP40-212ENST00000473191 TGOLN2O43493 480 aa12.47□□□□□ -0.41
USP40-212ENST00000473191 C8orf88P0DMB2 117 aa12.47□□□□□ -0.41
USP40-212ENST00000473191 CTF1Q16619 201 aa12.47□□□□□ -0.41
USP40-212ENST00000473191 IZUMO4Q1ZYL8 232 aa12.47□□□□□ -0.41
USP40-212ENST00000473191 SCARB1Q8WTV0 552 aa12.47□□□□□ -0.41
USP40-212ENST00000473191 ZNF436Q9C0F3 470 aaPredicted RBP12.47□□□□□ -0.41
USP40-212ENST00000473191 F11RQ9Y624 299 aaKnown RBP12.47□□□□□ -0.41
USP40-212ENST00000473191 ZNF207O43670 478 aaKnown RBP12.46□□□□□ -0.41
USP40-212ENST00000473191 FGF2P09038 288 aa12.46□□□□□ -0.41
USP40-212ENST00000473191 PI3P19957 117 aa12.46□□□□□ -0.41
USP40-212ENST00000473191 ADMP35318 185 aa12.46□□□□□ -0.41
USP40-212ENST00000473191 TSPAN5P62079 268 aa12.46□□□□□ -0.41
USP40-212ENST00000473191 CMTM1Q8IZ96 169 aa12.46□□□□□ -0.41
USP40-212ENST00000473191 VN1R17PQ8TDU5 208 aa12.46□□□□□ -0.41
USP40-212ENST00000473191 BORCS5Q969J3 196 aa12.46□□□□□ -0.41
USP40-212ENST00000473191 LSM10Q969L4 123 aaKnown RBP12.46□□□□□ -0.41
USP40-212ENST00000473191 SEC22AQ96IW7 307 aa12.46□□□□□ -0.41
USP40-212ENST00000473191 KLK11Q9UBX7 282 aa12.46□□□□□ -0.41
USP40-212ENST00000473191 SMIM31A0A1B0GVY4 71 aa12.45□□□□□ -0.42
USP40-212ENST00000473191 UBAC2Q8NBM4 344 aa12.45□□□□□ -0.42
USP40-212ENST00000473191 OR52B4Q8NGK2 314 aa12.45□□□□□ -0.42
USP40-212ENST00000473191 TMEM190Q8WZ59 177 aa12.45□□□□□ -0.42
USP40-212ENST00000473191 MRGPRFQ96AM1 343 aa12.45□□□□□ -0.42
USP40-212ENST00000473191 CMTM3Q96MX0 182 aa12.45□□□□□ -0.42
USP40-212ENST00000473191 SCPEP1Q9HB40 452 aa12.45□□□□□ -0.42
USP40-212ENST00000473191 TMEM14BQ9NUH8 114 aa12.45□□□□□ -0.42
USP40-212ENST00000473191 THYN1Q9P016 225 aa12.45□□□□□ -0.42
USP40-212ENST00000473191 LCE6AA0A183 80 aa12.44□□□□□ -0.42
USP40-212ENST00000473191 C15orf61A6NNL5 157 aa12.44□□□□□ -0.42
USP40-212ENST00000473191 FAM25AB3EWG3 89 aa12.44□□□□□ -0.42
USP40-212ENST00000473191 FAM25CB3EWG5 89 aa12.44□□□□□ -0.42
USP40-212ENST00000473191 FAM25GB3EWG6 89 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms