RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 MFSD4AQ8N468 514 aa13.3□□□□□ -0.28
SHH-205ENST00000472308 GDPD1Q8N9F7 314 aa13.3□□□□□ -0.28
SHH-205ENST00000472308 OR10W1Q8NGF6 305 aa13.3□□□□□ -0.28
SHH-205ENST00000472308 RHPN1-AS1Q9BWJ2 59 aa13.3□□□□□ -0.28
SHH-205ENST00000472308 SCRT1Q9BWW7 348 aa13.3□□□□□ -0.28
SHH-205ENST00000472308 PLCXD1Q9NUJ7 323 aa13.3□□□□□ -0.28
SHH-205ENST00000472308 DNAH5Q8TE73 4624 aa13.3□□□□□ -0.28
SHH-205ENST00000472308 IGHV3-49A0A0A0MS15 119 aa13.29□□□□□ -0.28
SHH-205ENST00000472308 SLC22A5O76082 557 aa13.29□□□□□ -0.28
SHH-205ENST00000472308 GNAO1P09471 354 aa13.29□□□□□ -0.28
SHH-205ENST00000472308 P0DMU3 169 aa13.29□□□□□ -0.28
SHH-205ENST00000472308 FAM231AP0DMU4 169 aa13.29□□□□□ -0.28
SHH-205ENST00000472308 FAM231CP0DMU5 169 aa13.29□□□□□ -0.28
SHH-205ENST00000472308 GBGT1Q8N5D6 347 aa13.29□□□□□ -0.28
SHH-205ENST00000472308 SRSF8Q9BRL6 282 aaKnown RBP13.29□□□□□ -0.28
SHH-205ENST00000472308 CENPOQ9BU64 300 aa13.29□□□□□ -0.28
SHH-205ENST00000472308 MND1Q9BWT6 205 aa13.29□□□□□ -0.28
SHH-205ENST00000472308 WT1-ASQ06250 92 aa13.28□□□□□ -0.28
SHH-205ENST00000472308 HES5Q5TA89 166 aa13.28□□□□□ -0.28
SHH-205ENST00000472308 LIPKQ5VXJ0 399 aa13.28□□□□□ -0.28
SHH-205ENST00000472308 LEMD1Q68G75 181 aa13.28□□□□□ -0.28
SHH-205ENST00000472308 Q6ZR54 194 aa13.28□□□□□ -0.28
SHH-205ENST00000472308 TMEM116Q8NCL8 245 aa13.28□□□□□ -0.28
SHH-205ENST00000472308 BPIFB6Q8NFQ5 453 aa13.28□□□□□ -0.28
SHH-205ENST00000472308 SCARB1Q8WTV0 552 aa13.28□□□□□ -0.28
SHH-205ENST00000472308 ATP6V0BQ99437 205 aa13.28□□□□□ -0.28
SHH-205ENST00000472308 HRASLSQ9HDD0 168 aa13.28□□□□□ -0.28
SHH-205ENST00000472308 C21orf62Q9NYP8 219 aa13.28□□□□□ -0.28
SHH-205ENST00000472308 CELA1Q9UNI1 258 aa13.28□□□□□ -0.28
SHH-205ENST00000472308 X6R8D5 127 aa13.28□□□□□ -0.28
SHH-205ENST00000472308 DTYMKP23919 212 aa13.27□□□□□ -0.29
SHH-205ENST00000472308 GADD45AP24522 165 aa13.27□□□□□ -0.29
SHH-205ENST00000472308 TALDO1P37837 337 aa13.27□□□□□ -0.29
SHH-205ENST00000472308 RPS25P62851 125 aaKnown RBP13.27□□□□□ -0.29
SHH-205ENST00000472308 SPHARQ15513 63 aa13.27□□□□□ -0.29
SHH-205ENST00000472308 ZNF66Q6ZN08 573 aa13.27□□□□□ -0.29
SHH-205ENST00000472308 QTRT1Q9BXR0 403 aaKnown RBP13.27□□□□□ -0.29
SHH-205ENST00000472308 ZNF705EA8MWA4 302 aaPredicted RBP13.26□□□□□ -0.29
SHH-205ENST00000472308 K7EIM0 57 aa13.26□□□□□ -0.29
SHH-205ENST00000472308 UPK2O00526 184 aa13.26□□□□□ -0.29
SHH-205ENST00000472308 SERPINE2P07093 398 aa13.26□□□□□ -0.29
SHH-205ENST00000472308 CTSGP08311 255 aa13.26□□□□□ -0.29
SHH-205ENST00000472308 MIFP14174 115 aa13.26□□□□□ -0.29
SHH-205ENST00000472308 ZNF767PQ75MW2 155 aa13.26□□□□□ -0.29
SHH-205ENST00000472308 FAM24BQ8N5W8 94 aa13.26□□□□□ -0.29
SHH-205ENST00000472308 MAPKAPK5-AS1Q8N8E1 139 aa13.26□□□□□ -0.29
SHH-205ENST00000472308 UBAC2Q8NBM4 344 aa13.26□□□□□ -0.29
SHH-205ENST00000472308 OR10C1Q96KK4 312 aa13.26□□□□□ -0.29
SHH-205ENST00000472308 V9GY05 133 aa13.26□□□□□ -0.29
SHH-205ENST00000472308 IGHV3OR16-13A0A075B7E8 117 aa13.25□□□□□ -0.29
SHH-205ENST00000472308 DEFB131BA0A096LNP1 70 aa13.25□□□□□ -0.29
SHH-205ENST00000472308 IGHV3-74A0A0B4J1X5 117 aa13.25□□□□□ -0.29
SHH-205ENST00000472308 TNFSF12O43508 249 aa13.25□□□□□ -0.29
SHH-205ENST00000472308 CDK2AP2O75956 126 aa13.25□□□□□ -0.29
SHH-205ENST00000472308 OR13C7P0DN81 318 aa13.25□□□□□ -0.29
SHH-205ENST00000472308 CALRP27797 417 aaKnown RBP13.25□□□□□ -0.29
SHH-205ENST00000472308 DEFB131AP59861 70 aa13.25□□□□□ -0.29
SHH-205ENST00000472308 POU2AF1Q16633 256 aa13.25□□□□□ -0.29
SHH-205ENST00000472308 C12orf74Q32Q52 190 aa13.25□□□□□ -0.29
SHH-205ENST00000472308 SLC25A24Q6NUK1 477 aa13.25□□□□□ -0.29
SHH-205ENST00000472308 COMMD5Q9GZQ3 224 aa13.25□□□□□ -0.29
SHH-205ENST00000472308 IGLV2-18A0A075B6J9 118 aa13.24□□□□□ -0.29
SHH-205ENST00000472308 ARL6IP5O75915 188 aa13.24□□□□□ -0.29
SHH-205ENST00000472308 CTXN2P0C2S0 81 aa13.24□□□□□ -0.29
SHH-205ENST00000472308 C4BPBP20851 252 aa13.24□□□□□ -0.29
SHH-205ENST00000472308 SPAG16Q8N0X2 631 aa13.24□□□□□ -0.29
SHH-205ENST00000472308 DHRSXQ8N5I4 330 aa13.24□□□□□ -0.29
SHH-205ENST00000472308 UFD1Q92890 307 aa13.24□□□□□ -0.29
SHH-205ENST00000472308 F11RQ9Y624 299 aaKnown RBP13.24□□□□□ -0.29
SHH-205ENST00000472308 NUPL2O15504 423 aaKnown RBP13.23□□□□□ -0.29
SHH-205ENST00000472308 CYB5BO43169 146 aa13.23□□□□□ -0.29
SHH-205ENST00000472308 RBFOX2O43251 390 aaKnown RBP eCLIP13.23□□□□□ -0.29
SHH-205ENST00000472308 CD74P04233 296 aa13.23□□□□□ -0.29
SHH-205ENST00000472308 FGF2P09038 288 aa13.23□□□□□ -0.29
SHH-205ENST00000472308 TAS2R31P59538 309 aa13.23□□□□□ -0.29
SHH-205ENST00000472308 Q56UQ5 140 aa13.23□□□□□ -0.29
SHH-205ENST00000472308 ZNF773Q6PK81 442 aa13.23□□□□□ -0.29
SHH-205ENST00000472308 TCF24Q7RTU0 167 aa13.23□□□□□ -0.29
SHH-205ENST00000472308 TRPT1Q86TN4 253 aaKnown RBP13.23□□□□□ -0.29
SHH-205ENST00000472308 C8orf59Q8N0T1 100 aaPredicted RBP13.23□□□□□ -0.29
SHH-205ENST00000472308 LILRB2Q8N423 598 aa13.23□□□□□ -0.29
SHH-205ENST00000472308 NDUFAF3Q9BU61 184 aa13.23□□□□□ -0.29
SHH-205ENST00000472308 MS4A6AQ9H2W1 248 aa13.23□□□□□ -0.29
SHH-205ENST00000472308 TMEM140Q9NV12 185 aa13.23□□□□□ -0.29
SHH-205ENST00000472308 DFFBO76075 338 aa13.22□□□□□ -0.29
SHH-205ENST00000472308 RAB6AP20340 208 aa13.22□□□□□ -0.29
SHH-205ENST00000472308 OR10A3P58181 314 aa13.22□□□□□ -0.29
SHH-205ENST00000472308 CNIH2Q6PI25 160 aa13.22□□□□□ -0.29
SHH-205ENST00000472308 Q6ZRM9 215 aa13.22□□□□□ -0.29
SHH-205ENST00000472308 DGCR14Q96DF8 476 aaKnown RBP13.22□□□□□ -0.29
SHH-205ENST00000472308 CMTM3Q96MX0 182 aa13.22□□□□□ -0.29
SHH-205ENST00000472308 AIFM2Q9BRQ8 373 aa13.22□□□□□ -0.29
SHH-205ENST00000472308 CCL28Q9NRJ3 127 aa13.22□□□□□ -0.29
SHH-205ENST00000472308 TRAV14DV4A0A0A6YYC5 116 aa13.21□□□□□ -0.29
SHH-205ENST00000472308 TEX50A0A1B0GTY4 177 aa13.21□□□□□ -0.29
SHH-205ENST00000472308 SULT1C2O00338 296 aa13.21□□□□□ -0.29
SHH-205ENST00000472308 YIF1AO95070 293 aa13.21□□□□□ -0.29
SHH-205ENST00000472308 TRAPPC2P0DI81 140 aa13.21□□□□□ -0.29
SHH-205ENST00000472308 TRAPPC2BP0DI82 140 aa13.21□□□□□ -0.29
SHH-205ENST00000472308 NQO2P16083 231 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms