RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 NSA2O95478 260 aaKnown RBP0.96□□□□□ -2.26
USP40-209ENST00000452724 IFNA5P01569 189 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 MSMBP08118 114 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 MSNP26038 577 aaKnown RBP0.96□□□□□ -2.26
USP40-209ENST00000452724 HAAOP46952 286 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 CSN1S1P47710 185 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 RAB13P51153 203 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 NKX2-5P52952 324 aaPredicted RBP0.96□□□□□ -2.26
USP40-209ENST00000452724 TCL1AP56279 114 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 PMAIP1Q13794 54 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 CDK5R1Q15078 307 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 ELOBQ15370 118 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 IMPG1Q17R60 797 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 COQ5Q5HYK3 327 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 FAM173BQ6P4H8 233 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 SSX8Q7RTT4 187 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 IMP4Q96G21 291 aaKnown RBP0.96□□□□□ -2.26
USP40-209ENST00000452724 CNBD2Q96M20 576 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 OR52E6Q96RD3 313 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 ADAT1Q9BUB4 502 aaKnown RBP0.96□□□□□ -2.26
USP40-209ENST00000452724 MED9Q9NWA0 146 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 CPAMD8Q8IZJ3 1885 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 ADCY9O60503 1353 aa0.96□□□□□ -2.26
USP40-209ENST00000452724 EVC2Q86UK5 1308 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 SCAF11Q99590 1463 aaKnown RBP0.95□□□□□ -2.26
USP40-209ENST00000452724 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP0.95□□□□□ -2.26
USP40-209ENST00000452724 MEIS3P1A6NDR6 274 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 OR51F1A6NGY5 319 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 I3L521 148 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 LEPROTO15243 131 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 NOS1APO75052 506 aaPredicted RBP0.95□□□□□ -2.26
USP40-209ENST00000452724 TRGC1P0CF51 173 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 HIST1H1EP10412 219 aaKnown RBP0.95□□□□□ -2.26
USP40-209ENST00000452724 IL9P15248 144 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 S100A7P31151 101 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 MAP2K4P45985 399 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 EVX1P49640 407 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 OR4D2P58180 307 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 OR2F1Q13607 317 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 RGS21Q2M5E4 152 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 ANKRD7Q92527 254 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 OR51I1Q9H343 314 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 XPNPEP1Q9NQW7 623 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 GUCA1BQ9UMX6 200 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 TIMM22Q9Y584 194 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 PCDH15Q96QU1 1955 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 PTPRSQ13332 1948 aa0.95□□□□□ -2.26
USP40-209ENST00000452724 IRGMA1A4Y4 181 aa0.94□□□□□ -2.26
USP40-209ENST00000452724 NFYAP23511 347 aaPredicted RBP0.94□□□□□ -2.26
USP40-209ENST00000452724 FXYD2P54710 66 aa0.94□□□□□ -2.26
USP40-209ENST00000452724 CCL20P78556 96 aa0.94□□□□□ -2.26
USP40-209ENST00000452724 RPL18Q07020 188 aaKnown RBP0.94□□□□□ -2.26
USP40-209ENST00000452724 IBA57Q5T440 356 aaKnown RBP0.94□□□□□ -2.26
USP40-209ENST00000452724 HIST2H3PS2Q5TEC6 136 aa0.94□□□□□ -2.26
USP40-209ENST00000452724 FAM27BQ5VT28 67 aa0.94□□□□□ -2.26
USP40-209ENST00000452724 SYPL2Q5VXT5 272 aa0.94□□□□□ -2.26
USP40-209ENST00000452724 C20orf196Q8IYI0 205 aa0.94□□□□□ -2.26
USP40-209ENST00000452724 ZNF676Q8N7Q3 588 aa0.94□□□□□ -2.26
USP40-209ENST00000452724 C9orf163Q8N9P6 203 aa0.94□□□□□ -2.26
USP40-209ENST00000452724 MNS1Q8NEH6 495 aa0.94□□□□□ -2.26
USP40-209ENST00000452724 OR1M1Q8NGA1 313 aa0.94□□□□□ -2.26
USP40-209ENST00000452724 SLC35B4Q969S0 331 aa0.94□□□□□ -2.26
USP40-209ENST00000452724 PAQR5Q9NXK6 330 aaPredicted RBP0.94□□□□□ -2.26
USP40-209ENST00000452724 DIDO1Q9BTC0 2240 aaKnown RBP0.94□□□□□ -2.26
USP40-209ENST00000452724 INTS1Q8N201 2190 aaKnown RBP0.94□□□□□ -2.26
USP40-209ENST00000452724 BRWD1Q9NSI6 2320 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 TRBV20OR9-2A0A075B6H5 130 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 EEF1E1-BLOC1S5C9J1V9 151 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 INMT-MINDY4F8WBC2 141 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 TRAPPC2LH3BP13 241 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 SLC22A1O15245 554 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 PRM2P04554 102 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 IFNA16P05015 189 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 SERPINA6P08185 405 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 SULT1A3P0DMM9 295 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 SULT1A4P0DMN0 295 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 SULT1A1P50225 295 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 PSME3P61289 254 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 IFITM2Q01629 132 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 SURF2Q15527 256 aaPredicted RBP0.93□□□□□ -2.26
USP40-209ENST00000452724 GRK1Q15835 563 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 GUK1Q16774 197 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 KRTAP5-10Q6L8G5 202 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 ALKAL1Q6UXT8 129 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 DCXRQ7Z4W1 244 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 TMEM86BQ8N661 226 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 C15orf53Q8NAA6 179 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 ERMAPQ96PL5 475 aaPredicted RBP0.93□□□□□ -2.26
USP40-209ENST00000452724 VPS29Q9UBQ0 182 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 FUT9Q9Y231 359 aa0.93□□□□□ -2.26
USP40-209ENST00000452724 MYOFQ9NZM1 2061 aa0.92□□□□□ -2.26
USP40-209ENST00000452724 TRBV10-2A0A0K0K1G8 114 aa0.92□□□□□ -2.26
USP40-209ENST00000452724 FABP5P3A8MUU1 101 aa0.92□□□□□ -2.26
USP40-209ENST00000452724 IBA57-AS1B1ANH7 110 aa0.92□□□□□ -2.26
USP40-209ENST00000452724 GOLGA6L19H0YKK7 550 aa0.92□□□□□ -2.26
USP40-209ENST00000452724 IGHV3-7P01780 117 aa0.92□□□□□ -2.26
USP40-209ENST00000452724 CD79AP11912 226 aa0.92□□□□□ -2.26
USP40-209ENST00000452724 CEBPGP53567 150 aa0.92□□□□□ -2.26
USP40-209ENST00000452724 PLCXD2Q0VAA5 305 aa0.92□□□□□ -2.26
USP40-209ENST00000452724 NDUFA5Q16718 116 aa0.92□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms