RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 FAM106AQ4KMX7 169 aa15.62■□□□□ 0.09
SDC1-205ENST00000447124 UNQ9165/PRO28630Q6UXU0 137 aa15.62■□□□□ 0.09
SDC1-205ENST00000447124 SNX29P2Q8IUI4 249 aa15.62■□□□□ 0.09
SDC1-205ENST00000447124 WDR89Q96FK6 387 aaPredicted RBP15.62■□□□□ 0.09
SDC1-205ENST00000447124 CXorf58Q96LI9 332 aa15.62■□□□□ 0.09
SDC1-205ENST00000447124 NDUFA4L2Q9NRX3 87 aa15.62■□□□□ 0.09
SDC1-205ENST00000447124 TECRQ9NZ01 308 aaKnown RBP15.62■□□□□ 0.09
SDC1-205ENST00000447124 SMIM31A0A1B0GVY4 71 aa15.61■□□□□ 0.09
SDC1-205ENST00000447124 MARCH11A6NNE9 402 aa15.61■□□□□ 0.09
SDC1-205ENST00000447124 HPGDSO60760 199 aa15.61■□□□□ 0.09
SDC1-205ENST00000447124 OR13C7P0DN81 318 aa15.61■□□□□ 0.09
SDC1-205ENST00000447124 PTBP1P26599 531 aaKnown RBP eCLIP15.61■□□□□ 0.09
SDC1-205ENST00000447124 G6PCP35575 357 aa15.61■□□□□ 0.09
SDC1-205ENST00000447124 MFAP2P55001 183 aa15.61■□□□□ 0.09
SDC1-205ENST00000447124 PHLDA2Q53GA4 152 aa15.61■□□□□ 0.09
SDC1-205ENST00000447124 TM4SF20Q53R12 229 aa15.61■□□□□ 0.09
SDC1-205ENST00000447124 LAX1Q8IWV1 398 aa15.61■□□□□ 0.09
SDC1-205ENST00000447124 CADM3Q8N126 398 aa15.61■□□□□ 0.09
SDC1-205ENST00000447124 DEFB125Q8N687 156 aa15.61■□□□□ 0.09
SDC1-205ENST00000447124 UXS1Q8NBZ7 420 aa15.61■□□□□ 0.09
SDC1-205ENST00000447124 OR1L8Q8NGR8 309 aa15.61■□□□□ 0.09
SDC1-205ENST00000447124 SPATA25Q9BR10 227 aa15.61■□□□□ 0.09
SDC1-205ENST00000447124 WFDC10AQ9H1F0 79 aa15.61■□□□□ 0.09
SDC1-205ENST00000447124 MLXQ9UH92 298 aa15.61■□□□□ 0.09
SDC1-205ENST00000447124 RBMY1BA6NDE4 496 aaKnown RBP15.6■□□□□ 0.09
SDC1-205ENST00000447124 RBMY1EA6NEQ0 496 aaKnown RBP15.6■□□□□ 0.09
SDC1-205ENST00000447124 SERPINE2P07093 398 aa15.6■□□□□ 0.09
SDC1-205ENST00000447124 RBMY1DP0C7P1 496 aaKnown RBP15.6■□□□□ 0.09
SDC1-205ENST00000447124 ERVK-16P61578 105 aa15.6■□□□□ 0.09
SDC1-205ENST00000447124 GUCA2BQ16661 112 aa15.6■□□□□ 0.09
SDC1-205ENST00000447124 CMTM1Q8IZ96 169 aa15.6■□□□□ 0.09
SDC1-205ENST00000447124 SCPEP1Q9HB40 452 aa15.6■□□□□ 0.09
SDC1-205ENST00000447124 IGHV3-35A0A0C4DH35 117 aa15.59■□□□□ 0.09
SDC1-205ENST00000447124 DBX1A6NMT0 343 aa15.59■□□□□ 0.09
SDC1-205ENST00000447124 A8MWP6 167 aa15.59■□□□□ 0.09
SDC1-205ENST00000447124 SMIM18P0DKX4 95 aa15.59■□□□□ 0.09
SDC1-205ENST00000447124 LYL1P12980 280 aa15.59■□□□□ 0.09
SDC1-205ENST00000447124 GPR183P32249 361 aa15.59■□□□□ 0.09
SDC1-205ENST00000447124 TSPAN5P62079 268 aa15.59■□□□□ 0.09
SDC1-205ENST00000447124 SLC25A24Q6NUK1 477 aa15.59■□□□□ 0.09
SDC1-205ENST00000447124 TMEM61Q8N0U2 210 aa15.59■□□□□ 0.09
SDC1-205ENST00000447124 GDPD1Q8N9F7 314 aa15.59■□□□□ 0.09
SDC1-205ENST00000447124 SLC2A8Q9NY64 477 aa15.59■□□□□ 0.09
SDC1-205ENST00000447124 OR51B2Q9Y5P1 312 aa15.59■□□□□ 0.09
SDC1-205ENST00000447124 CSMD3Q7Z407 3707 aa15.59■□□□□ 0.09
SDC1-205ENST00000447124 TPPPO94811 219 aa15.58■□□□□ 0.08
SDC1-205ENST00000447124 C8orf88P0DMB2 117 aa15.58■□□□□ 0.08
SDC1-205ENST00000447124 RORCP51449 518 aa15.58■□□□□ 0.08
SDC1-205ENST00000447124 CTF1Q16619 201 aa15.58■□□□□ 0.08
SDC1-205ENST00000447124 THOC7Q6I9Y2 204 aaKnown RBP15.58■□□□□ 0.08
SDC1-205ENST00000447124 VN1R17PQ8TDU5 208 aa15.58■□□□□ 0.08
SDC1-205ENST00000447124 HINT2Q9BX68 163 aa15.58■□□□□ 0.08
SDC1-205ENST00000447124 HIPK2Q9H2X6 1198 aa15.58■□□□□ 0.08
SDC1-205ENST00000447124 RETNQ9HD89 108 aa15.58■□□□□ 0.08
SDC1-205ENST00000447124 THYN1Q9P016 225 aa15.58■□□□□ 0.08
SDC1-205ENST00000447124 CEPT1Q9Y6K0 416 aa15.58■□□□□ 0.08
SDC1-205ENST00000447124 IGHV3-21A0A0B4J1V1 117 aa15.57■□□□□ 0.08
SDC1-205ENST00000447124 OR11H12B2RN74 326 aa15.57■□□□□ 0.08
SDC1-205ENST00000447124 IGKV1-39P01597 117 aa15.57■□□□□ 0.08
SDC1-205ENST00000447124 IGKV1D-39P04432 117 aa15.57■□□□□ 0.08
SDC1-205ENST00000447124 UCP3P55916 312 aa15.57■□□□□ 0.08
SDC1-205ENST00000447124 ZNF57Q68EA5 555 aaPredicted RBP15.57■□□□□ 0.08
SDC1-205ENST00000447124 ZFAND6Q6FIF0 208 aa15.57■□□□□ 0.08
SDC1-205ENST00000447124 PLET1Q6UQ28 207 aa15.57■□□□□ 0.08
SDC1-205ENST00000447124 TBC1D26Q86UD7 250 aa15.57■□□□□ 0.08
SDC1-205ENST00000447124 ZNF436Q9C0F3 470 aaPredicted RBP15.57■□□□□ 0.08
SDC1-205ENST00000447124 F11RQ9Y624 299 aaKnown RBP15.57■□□□□ 0.08
SDC1-205ENST00000447124 M0QYG6 137 aa15.56■□□□□ 0.08
SDC1-205ENST00000447124 SNAPC5O75971 98 aa15.56■□□□□ 0.08
SDC1-205ENST00000447124 RCVRNP35243 200 aa15.56■□□□□ 0.08
SDC1-205ENST00000447124 LPCAT3Q6P1A2 487 aa15.56■□□□□ 0.08
SDC1-205ENST00000447124 HSD17B13Q7Z5P4 300 aaPredicted RBP15.56■□□□□ 0.08
SDC1-205ENST00000447124 LSM10Q969L4 123 aaKnown RBP15.56■□□□□ 0.08
SDC1-205ENST00000447124 SRD5A3Q9H8P0 318 aa15.56■□□□□ 0.08
SDC1-205ENST00000447124 FAM212BQ9NTI7 297 aaPredicted RBP15.56■□□□□ 0.08
SDC1-205ENST00000447124 F8W735 103 aaPredicted RBP15.55■□□□□ 0.08
SDC1-205ENST00000447124 TGOLN2O43493 480 aa15.55■□□□□ 0.08
SDC1-205ENST00000447124 BTNL8Q6UX41 500 aa15.55■□□□□ 0.08
SDC1-205ENST00000447124 SCARB1Q8WTV0 552 aa15.55■□□□□ 0.08
SDC1-205ENST00000447124 SEC22AQ96IW7 307 aa15.55■□□□□ 0.08
SDC1-205ENST00000447124 TMEM14BQ9NUH8 114 aa15.55■□□□□ 0.08
SDC1-205ENST00000447124 GAR1Q9NY12 217 aaKnown RBP15.55■□□□□ 0.08
SDC1-205ENST00000447124 KLK11Q9UBX7 282 aa15.55■□□□□ 0.08
SDC1-205ENST00000447124 PRNDQ9UKY0 176 aa15.55■□□□□ 0.08
SDC1-205ENST00000447124 OR2T8A6NH00 312 aa15.54■□□□□ 0.08
SDC1-205ENST00000447124 FAM25AB3EWG3 89 aa15.54■□□□□ 0.08
SDC1-205ENST00000447124 FAM25CB3EWG5 89 aa15.54■□□□□ 0.08
SDC1-205ENST00000447124 FAM25GB3EWG6 89 aa15.54■□□□□ 0.08
SDC1-205ENST00000447124 K7EIM0 57 aa15.54■□□□□ 0.08
SDC1-205ENST00000447124 SCAF4O95104 1147 aaKnown RBP15.54■□□□□ 0.08
SDC1-205ENST00000447124 GABARAPO95166 117 aa15.54■□□□□ 0.08
SDC1-205ENST00000447124 RNASE12Q5GAN4 147 aaKnown RBP15.54■□□□□ 0.08
SDC1-205ENST00000447124 ZNF414Q96IQ9 312 aa15.54■□□□□ 0.08
SDC1-205ENST00000447124 CHRDL1Q9BU40 450 aa15.54■□□□□ 0.08
SDC1-205ENST00000447124 PALMDQ9NP74 551 aa15.54■□□□□ 0.08
SDC1-205ENST00000447124 MRPL27Q9P0M9 148 aaKnown RBP15.54■□□□□ 0.08
SDC1-205ENST00000447124 IFNA6P05013 189 aa15.53■□□□□ 0.08
SDC1-205ENST00000447124 ZNF182P17025 639 aaPredicted RBP15.53■□□□□ 0.08
SDC1-205ENST00000447124 ADMP35318 185 aa15.53■□□□□ 0.08
SDC1-205ENST00000447124 ELLP55199 621 aaPredicted RBP15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms