RNA–Protein interactions for RNA: ENST00000396521.3

EXOSC3-202, Transcript of exosome component 3, humanhuman

TSL 2 BASIC

Gene EXOSC3, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-202ENST00000396521 REG1AP05451 166 aa12.95□□□□□ -0.34
EXOSC3-202ENST00000396521 NQO2P16083 231 aa12.95□□□□□ -0.34
EXOSC3-202ENST00000396521 GNG2P59768 71 aa12.95□□□□□ -0.34
EXOSC3-202ENST00000396521 CATR1Q13166 79 aa12.95□□□□□ -0.34
EXOSC3-202ENST00000396521 SSR3Q9UNL2 185 aa12.95□□□□□ -0.34
EXOSC3-202ENST00000396521 LOC100506127A0A0U1RQW1 187 aa12.94□□□□□ -0.34
EXOSC3-202ENST00000396521 CGB1A6NKQ9 187 aa12.94□□□□□ -0.34
EXOSC3-202ENST00000396521 ADMP35318 185 aa12.94□□□□□ -0.34
EXOSC3-202ENST00000396521 ODF3L2Q3SX64 289 aa12.94□□□□□ -0.34
EXOSC3-202ENST00000396521 C22orf42Q6IC83 251 aa12.94□□□□□ -0.34
EXOSC3-202ENST00000396521 SPAG16Q8N0X2 631 aa12.94□□□□□ -0.34
EXOSC3-202ENST00000396521 GDPD1Q8N9F7 314 aa12.94□□□□□ -0.34
EXOSC3-202ENST00000396521 BORCS5Q969J3 196 aa12.94□□□□□ -0.34
EXOSC3-202ENST00000396521 QTRT1Q9BXR0 403 aaKnown RBP12.94□□□□□ -0.34
EXOSC3-202ENST00000396521 CSTL1Q9H114 145 aa12.94□□□□□ -0.34
EXOSC3-202ENST00000396521 UBQLN2Q9UHD9 624 aa12.94□□□□□ -0.34
EXOSC3-202ENST00000396521 ELF5Q9UKW6 265 aaPredicted RBP12.94□□□□□ -0.34
EXOSC3-202ENST00000396521 UPK2O00526 184 aa12.93□□□□□ -0.34
EXOSC3-202ENST00000396521 PLEKHA2Q9HB19 425 aa12.93□□□□□ -0.34
EXOSC3-202ENST00000396521 IGHV3-35A0A0C4DH35 117 aa12.92□□□□□ -0.34
EXOSC3-202ENST00000396521 C15orf62A8K5M9 175 aa12.92□□□□□ -0.34
EXOSC3-202ENST00000396521 MPTX1A8MV57 137 aa12.92□□□□□ -0.34
EXOSC3-202ENST00000396521 SERPINE2P07093 398 aa12.92□□□□□ -0.34
EXOSC3-202ENST00000396521 CADM3Q8N126 398 aa12.92□□□□□ -0.34
EXOSC3-202ENST00000396521 C11orf45Q8TAV5 145 aa12.92□□□□□ -0.34
EXOSC3-202ENST00000396521 NUDCD2Q8WVJ2 157 aa12.92□□□□□ -0.34
EXOSC3-202ENST00000396521 C11orf68Q9H3H3 251 aaKnown RBP12.92□□□□□ -0.34
EXOSC3-202ENST00000396521 TMEM235A6NFC5 223 aa12.91□□□□□ -0.34
EXOSC3-202ENST00000396521 NOTOA8MTQ0 251 aa12.91□□□□□ -0.34
EXOSC3-202ENST00000396521 DEDDO75618 318 aa12.91□□□□□ -0.34
EXOSC3-202ENST00000396521 CD5P06127 495 aa12.91□□□□□ -0.34
EXOSC3-202ENST00000396521 TRAPPC2P0DI81 140 aa12.91□□□□□ -0.34
EXOSC3-202ENST00000396521 TRAPPC2BP0DI82 140 aa12.91□□□□□ -0.34
EXOSC3-202ENST00000396521 RPL35AP18077 110 aaKnown RBP12.91□□□□□ -0.34
EXOSC3-202ENST00000396521 RBMS2Q15434 407 aaKnown RBP12.91□□□□□ -0.34
EXOSC3-202ENST00000396521 OR13F1Q8NGS4 319 aa12.91□□□□□ -0.34
EXOSC3-202ENST00000396521 SECTM1Q8WVN6 248 aa12.91□□□□□ -0.34
EXOSC3-202ENST00000396521 RARRES2Q99969 163 aa12.91□□□□□ -0.34
EXOSC3-202ENST00000396521 TXNL4BQ9NX01 149 aaKnown RBP12.91□□□□□ -0.34
EXOSC3-202ENST00000396521 C21orf62Q9NYP8 219 aa12.91□□□□□ -0.34
EXOSC3-202ENST00000396521 COMMD9Q9P000 198 aa12.91□□□□□ -0.34
EXOSC3-202ENST00000396521 OR2T8A6NH00 312 aa12.9□□□□□ -0.34
EXOSC3-202ENST00000396521 OR13C7P0DN81 318 aa12.9□□□□□ -0.34
EXOSC3-202ENST00000396521 FGF9P31371 208 aaPredicted RBP12.9□□□□□ -0.34
EXOSC3-202ENST00000396521 FCGR2CP31995 323 aa12.9□□□□□ -0.34
EXOSC3-202ENST00000396521 SLC25A24Q6NUK1 477 aa12.9□□□□□ -0.34
EXOSC3-202ENST00000396521 GPR141Q7Z602 305 aa12.9□□□□□ -0.34
EXOSC3-202ENST00000396521 TPRA1Q86W33 373 aa12.9□□□□□ -0.34
EXOSC3-202ENST00000396521 BEST4Q8NFU0 473 aa12.9□□□□□ -0.34
EXOSC3-202ENST00000396521 DMBX1Q8NFW5 382 aa12.9□□□□□ -0.34
EXOSC3-202ENST00000396521 OR1L8Q8NGR8 309 aa12.9□□□□□ -0.34
EXOSC3-202ENST00000396521 C2CD4CQ8TF44 421 aa12.9□□□□□ -0.34
EXOSC3-202ENST00000396521 C20orf24Q9BUV8 137 aa12.9□□□□□ -0.34
EXOSC3-202ENST00000396521 CCL28Q9NRJ3 127 aa12.9□□□□□ -0.34
EXOSC3-202ENST00000396521 HERC2O95714 4834 aa12.89□□□□□ -0.35
EXOSC3-202ENST00000396521 SULT1C2O00338 296 aa12.89□□□□□ -0.35
EXOSC3-202ENST00000396521 TNFSF12O43508 249 aa12.89□□□□□ -0.35
EXOSC3-202ENST00000396521 PPYP01298 95 aa12.89□□□□□ -0.35
EXOSC3-202ENST00000396521 SCAND1P57086 179 aa12.89□□□□□ -0.35
EXOSC3-202ENST00000396521 ERVK-16P61578 105 aa12.89□□□□□ -0.35
EXOSC3-202ENST00000396521 RELQ04864 619 aaPredicted RBP12.89□□□□□ -0.35
EXOSC3-202ENST00000396521 YIPF6Q96EC8 236 aa12.89□□□□□ -0.35
EXOSC3-202ENST00000396521 CMTM3Q96MX0 182 aa12.89□□□□□ -0.35
EXOSC3-202ENST00000396521 SLC5A7Q9GZV3 580 aa12.89□□□□□ -0.35
EXOSC3-202ENST00000396521 TMEM140Q9NV12 185 aa12.89□□□□□ -0.35
EXOSC3-202ENST00000396521 SMPXQ9UHP9 88 aa12.89□□□□□ -0.35
EXOSC3-202ENST00000396521 F11RQ9Y624 299 aaKnown RBP12.89□□□□□ -0.35
EXOSC3-202ENST00000396521 A0A0A6YYH2 397 aa12.88□□□□□ -0.35
EXOSC3-202ENST00000396521 A6NJ64 397 aa12.88□□□□□ -0.35
EXOSC3-202ENST00000396521 SSX5O60225 188 aa12.88□□□□□ -0.35
EXOSC3-202ENST00000396521 CTSDP07339 412 aaPredicted RBP12.88□□□□□ -0.35
EXOSC3-202ENST00000396521 RPA2P15927 270 aa12.88□□□□□ -0.35
EXOSC3-202ENST00000396521 PAFAH1B2P68402 229 aa12.88□□□□□ -0.35
EXOSC3-202ENST00000396521 OR5B3Q8NH48 314 aa12.88□□□□□ -0.35
EXOSC3-202ENST00000396521 LSM10Q969L4 123 aaKnown RBP12.88□□□□□ -0.35
EXOSC3-202ENST00000396521 FKBP11Q9NYL4 201 aa12.88□□□□□ -0.35
EXOSC3-202ENST00000396521 ETV7Q9Y603 341 aa12.88□□□□□ -0.35
EXOSC3-202ENST00000396521 TRAV3A0A0B4J244 114 aa12.87□□□□□ -0.35
EXOSC3-202ENST00000396521 SMIM30A4D0T7 59 aa12.87□□□□□ -0.35
EXOSC3-202ENST00000396521 C11orf94C9JXX5 98 aa12.87□□□□□ -0.35
EXOSC3-202ENST00000396521 FCGR2BP31994 310 aaPredicted RBP12.87□□□□□ -0.35
EXOSC3-202ENST00000396521 WT1-ASQ06250 92 aa12.87□□□□□ -0.35
EXOSC3-202ENST00000396521 NR2C2APQ86WQ0 139 aa12.87□□□□□ -0.35
EXOSC3-202ENST00000396521 HOGA1Q86XE5 327 aa12.87□□□□□ -0.35
EXOSC3-202ENST00000396521 OR10W1Q8NGF6 305 aa12.87□□□□□ -0.35
EXOSC3-202ENST00000396521 OR11H2Q8NH07 326 aa12.87□□□□□ -0.35
EXOSC3-202ENST00000396521 SCARB1Q8WTV0 552 aa12.87□□□□□ -0.35
EXOSC3-202ENST00000396521 GIMAP1Q8WWP7 306 aa12.87□□□□□ -0.35
EXOSC3-202ENST00000396521 GPHA2Q96T91 129 aa12.87□□□□□ -0.35
EXOSC3-202ENST00000396521 FUNDC2Q9BWH2 189 aa12.87□□□□□ -0.35
EXOSC3-202ENST00000396521 NDUFA4L2Q9NRX3 87 aa12.87□□□□□ -0.35
EXOSC3-202ENST00000396521 TEX50A0A1B0GTY4 177 aa12.86□□□□□ -0.35
EXOSC3-202ENST00000396521 NUPL2O15504 423 aaKnown RBP12.86□□□□□ -0.35
EXOSC3-202ENST00000396521 NOL3O60936 208 aaKnown RBP12.86□□□□□ -0.35
EXOSC3-202ENST00000396521 SNAPC5O75971 98 aa12.86□□□□□ -0.35
EXOSC3-202ENST00000396521 S1PR2O95136 353 aa12.86□□□□□ -0.35
EXOSC3-202ENST00000396521 LSM3P62310 102 aaKnown RBP12.86□□□□□ -0.35
EXOSC3-202ENST00000396521 MXD1Q05195 221 aa12.86□□□□□ -0.35
EXOSC3-202ENST00000396521 TMEM116Q8NCL8 245 aa12.86□□□□□ -0.35
EXOSC3-202ENST00000396521 TMEM56Q96MV1 263 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms