RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ZNF705GA8MUZ8 300 aaPredicted RBP8.5□□□□□ -1.05
COL6A3-205ENST00000392004 IFNL4K9M1U5 179 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 IGHV3-23P01764 117 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 FGF7P21781 194 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 SRPXP78539 464 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 DEFB113Q30KQ7 82 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 CDPF1Q6NVV7 123 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 ZNF818PQ6ZRF7 136 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 SAXO1Q8IYX7 474 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 MRPL20Q9BYC9 149 aaKnown RBP8.5□□□□□ -1.05
COL6A3-205ENST00000392004 F2RP25116 425 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 RND3P61587 244 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 EWSR1Q01844 656 aaKnown RBP eCLIP8.5□□□□□ -1.05
COL6A3-205ENST00000392004 ELOBQ15370 118 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 LBHQ53QV2 105 aaPredicted RBP8.5□□□□□ -1.05
COL6A3-205ENST00000392004 LHFPL4Q7Z7J7 247 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 OR2C3Q8N628 320 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 OR10A7Q8NGE5 316 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 ZNF418Q8TF45 676 aaPredicted RBP8.5□□□□□ -1.05
COL6A3-205ENST00000392004 TMEM186Q96B77 213 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 PSENENQ9NZ42 101 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 A0A1W2PPV4 95 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 FAM24AA6NFZ4 105 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 TCAPO15273 167 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 IGHV3-11P01762 117 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 CXCL1P09341 107 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 ATP6V0CP27449 155 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 LIAT1Q6ZQX7 453 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 HIST3H2BBQ8N257 126 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 CYB561D1Q8N8Q1 229 aa8.5□□□□□ -1.05
COL6A3-205ENST00000392004 MRPL30Q8TCC3 161 aaKnown RBP8.5□□□□□ -1.05
COL6A3-205ENST00000392004 GNPNAT1Q96EK6 184 aaPredicted RBP8.5□□□□□ -1.05
COL6A3-205ENST00000392004 COL5A1P20908 1838 aaPredicted RBP8.49□□□□□ -1.05
COL6A3-205ENST00000392004 IGKV1D-13A0A0B4J2D9 117 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 H3BUX3 64 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 TRGC1P0CF51 173 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 IGKV1-13P0DP09 117 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 GFI1BQ5VTD9 330 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 UNQ5815/PRO19632Q6UWF5 114 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 MSI2Q96DH6 328 aaKnown RBP8.49□□□□□ -1.05
COL6A3-205ENST00000392004 GAFA1Q96PS6 74 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 PRDM13Q9H4Q3 707 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 TIMM23O14925 209 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 SIAH2O43255 324 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 S1PR2O95136 353 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 MSMBP08118 114 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 SRP19P09132 144 aaKnown RBP8.49□□□□□ -1.05
COL6A3-205ENST00000392004 LGALS7P47929 136 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 SLC35E4Q6ICL7 350 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 ZNF329Q86UD4 541 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 SLC25A22Q9H936 323 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 PPP1R14DQ9NXH3 145 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 IGLV3-9A0A075B6K5 115 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 IGHV3-49A0A0A0MS15 119 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 IFITM10A6NMD0 228 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 B4DEV8 164 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 CLDN34H7C241 214 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 SCGB2A1O75556 95 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 SRSF2Q01130 221 aaKnown RBP8.49□□□□□ -1.05
COL6A3-205ENST00000392004 DNLZQ5SXM8 178 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 LINC00596Q86U02 117 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 FAM89BQ8N5H3 189 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 COQ2Q96H96 371 aa8.49□□□□□ -1.05
COL6A3-205ENST00000392004 C1orf147Q96MC9 270 aaPredicted RBP8.49□□□□□ -1.05
COL6A3-205ENST00000392004 MMP23AO75900 390 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 SCAF4O95104 1147 aaKnown RBP8.48□□□□□ -1.05
COL6A3-205ENST00000392004 SRD5A1P18405 259 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 RPP30P78346 268 aaKnown RBP8.48□□□□□ -1.05
COL6A3-205ENST00000392004 TMEM187Q14656 261 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 SLC35E3Q7Z769 313 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 WFDC3Q8IUB2 231 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 SLC35E1Q96K37 410 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 TMEM68Q96MH6 324 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 HSD17B10Q99714 261 aaKnown RBP8.48□□□□□ -1.05
COL6A3-205ENST00000392004 SCRT1Q9BWW7 348 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 TMEM133Q9H2Q1 129 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 LINC00312Q9Y6C7 94 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 HSPB1P04792 205 aaKnown RBP8.48□□□□□ -1.05
COL6A3-205ENST00000392004 WNT2P09544 360 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 TFPI2P48307 235 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 SUB1P53999 127 aaKnown RBP eCLIP8.48□□□□□ -1.05
COL6A3-205ENST00000392004 SPCS3P61009 180 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 CCL20P78556 96 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 FAM169BQ8N8A8 192 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 OR52M1Q8NGK5 317 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 CABLES2Q9BTV7 478 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.48□□□□□ -1.05
COL6A3-205ENST00000392004 J3QR06 171 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 CYB5R2Q6BCY4 276 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 FGF23Q9GZV9 251 aaPredicted RBP8.48□□□□□ -1.05
COL6A3-205ENST00000392004 GNG13Q9P2W3 67 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 PITPNC1Q9UKF7 332 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 HSF4Q9ULV5 492 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 KMT2EQ8IZD2 1858 aa8.48□□□□□ -1.05
COL6A3-205ENST00000392004 NCKAP5O14513 1909 aa8.47□□□□□ -1.05
COL6A3-205ENST00000392004 C17orf98A8MV24 154 aa8.47□□□□□ -1.05
COL6A3-205ENST00000392004 G0S2P27469 103 aa8.47□□□□□ -1.05
COL6A3-205ENST00000392004 PPOXP50336 477 aa8.47□□□□□ -1.05
COL6A3-205ENST00000392004 TMEM42Q69YG0 159 aa8.47□□□□□ -1.05
COL6A3-205ENST00000392004 OR10P1Q8NGE3 313 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms