RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 HRH4Q9H3N8 390 aa10.15□□□□□ -0.78
VPS29-201ENST00000360579 TAS2R8Q9NYW2 309 aa10.15□□□□□ -0.78
VPS29-201ENST00000360579 IGKV1D-13A0A0B4J2D9 117 aa10.14□□□□□ -0.79
VPS29-201ENST00000360579 CGB1A6NKQ9 187 aa10.14□□□□□ -0.79
VPS29-201ENST00000360579 C15orf62A8K5M9 175 aa10.14□□□□□ -0.79
VPS29-201ENST00000360579 PDCD5O14737 125 aa10.14□□□□□ -0.79
VPS29-201ENST00000360579 XRCC3O43542 346 aa10.14□□□□□ -0.79
VPS29-201ENST00000360579 HSMCR30P0CW71 290 aa10.14□□□□□ -0.79
VPS29-201ENST00000360579 IGKV1-13P0DP09 117 aa10.14□□□□□ -0.79
VPS29-201ENST00000360579 BRWD1-AS2P59051 145 aa10.14□□□□□ -0.79
VPS29-201ENST00000360579 RPS25P62851 125 aaKnown RBP10.14□□□□□ -0.79
VPS29-201ENST00000360579 CNIH2Q6PI25 160 aa10.14□□□□□ -0.79
VPS29-201ENST00000360579 NR2C2APQ86WQ0 139 aa10.14□□□□□ -0.79
VPS29-201ENST00000360579 GDPD1Q8N9F7 314 aa10.14□□□□□ -0.79
VPS29-201ENST00000360579 QTRT1Q9BXR0 403 aaKnown RBP10.14□□□□□ -0.79
VPS29-201ENST00000360579 ACOT13Q9NPJ3 140 aa10.14□□□□□ -0.79
VPS29-201ENST00000360579 SCN3BQ9NY72 215 aa10.14□□□□□ -0.79
VPS29-201ENST00000360579 A0A1B0GVY2 172 aa10.13□□□□□ -0.79
VPS29-201ENST00000360579 RBFOX2O43251 390 aaKnown RBP eCLIP10.13□□□□□ -0.79
VPS29-201ENST00000360579 TAS2R31P59538 309 aa10.13□□□□□ -0.79
VPS29-201ENST00000360579 TMEM187Q14656 261 aa10.13□□□□□ -0.79
VPS29-201ENST00000360579 MSMO1Q15800 293 aa10.13□□□□□ -0.79
VPS29-201ENST00000360579 CENPSQ8N2Z9 138 aa10.13□□□□□ -0.79
VPS29-201ENST00000360579 CMTM3Q96MX0 182 aa10.13□□□□□ -0.79
VPS29-201ENST00000360579 PKD1P98161 4303 aa10.12□□□□□ -0.79
VPS29-201ENST00000360579 IFITM5A6NNB3 132 aa10.12□□□□□ -0.79
VPS29-201ENST00000360579 CA1P00915 261 aaPredicted RBP10.12□□□□□ -0.79
VPS29-201ENST00000360579 NQO2P16083 231 aa10.12□□□□□ -0.79
VPS29-201ENST00000360579 MLLT11Q13015 90 aaPredicted RBP10.12□□□□□ -0.79
VPS29-201ENST00000360579 HACD4Q5VWC8 232 aa10.12□□□□□ -0.79
VPS29-201ENST00000360579 SLC25A24Q6NUK1 477 aa10.12□□□□□ -0.79
VPS29-201ENST00000360579 SPAG16Q8N0X2 631 aa10.12□□□□□ -0.79
VPS29-201ENST00000360579 RNF2Q99496 336 aa10.12□□□□□ -0.79
VPS29-201ENST00000360579 C21orf62Q9NYP8 219 aa10.12□□□□□ -0.79
VPS29-201ENST00000360579 SMPXQ9UHP9 88 aa10.12□□□□□ -0.79
VPS29-201ENST00000360579 ETV7Q9Y603 341 aa10.12□□□□□ -0.79
VPS29-201ENST00000360579 UPK2O00526 184 aa10.11□□□□□ -0.79
VPS29-201ENST00000360579 DEFB4AO15263 64 aa10.11□□□□□ -0.79
VPS29-201ENST00000360579 ZNF207O43670 478 aaKnown RBP10.11□□□□□ -0.79
VPS29-201ENST00000360579 HPRT1P00492 218 aa10.11□□□□□ -0.79
VPS29-201ENST00000360579 CD5P06127 495 aa10.11□□□□□ -0.79
VPS29-201ENST00000360579 SERPINE2P07093 398 aa10.11□□□□□ -0.79
VPS29-201ENST00000360579 PAFAH1B2P68402 229 aa10.11□□□□□ -0.79
VPS29-201ENST00000360579 FABP5Q01469 135 aa10.11□□□□□ -0.79
VPS29-201ENST00000360579 RELQ04864 619 aaPredicted RBP10.11□□□□□ -0.79
VPS29-201ENST00000360579 ZNF124Q15973 351 aa10.11□□□□□ -0.79
VPS29-201ENST00000360579 POU2AF1Q16633 256 aa10.11□□□□□ -0.79
VPS29-201ENST00000360579 CDNFQ49AH0 187 aa10.11□□□□□ -0.79
VPS29-201ENST00000360579 TMEM116Q8NCL8 245 aa10.11□□□□□ -0.79
VPS29-201ENST00000360579 ZBTB34Q8NCN2 500 aa10.11□□□□□ -0.79
VPS29-201ENST00000360579 CHRDL1Q9BU40 450 aa10.11□□□□□ -0.79
VPS29-201ENST00000360579 RHPN1-AS1Q9BWJ2 59 aa10.11□□□□□ -0.79
VPS29-201ENST00000360579 CCDC90BQ9GZT6 254 aa10.11□□□□□ -0.79
VPS29-201ENST00000360579 ATG5Q9H1Y0 275 aa10.11□□□□□ -0.79
VPS29-201ENST00000360579 ANXA10Q9UJ72 324 aa10.11□□□□□ -0.79
VPS29-201ENST00000360579 IGHV3OR16-8A0A075B7F1 116 aa10.1□□□□□ -0.79
VPS29-201ENST00000360579 TRAV1-2A0A0B4J238 106 aa10.1□□□□□ -0.79
VPS29-201ENST00000360579 IGHV7-4-1A0A0J9YVY3 117 aa10.1□□□□□ -0.79
VPS29-201ENST00000360579 C15orf61A6NNL5 157 aa10.1□□□□□ -0.79
VPS29-201ENST00000360579 CHEK1O14757 476 aa10.1□□□□□ -0.79
VPS29-201ENST00000360579 TRAPPC2P0DI81 140 aa10.1□□□□□ -0.79
VPS29-201ENST00000360579 TRAPPC2BP0DI82 140 aa10.1□□□□□ -0.79
VPS29-201ENST00000360579 OR13C7P0DN81 318 aa10.1□□□□□ -0.79
VPS29-201ENST00000360579 TFPI2P48307 235 aa10.1□□□□□ -0.79
VPS29-201ENST00000360579 CATR1Q13166 79 aa10.1□□□□□ -0.79
VPS29-201ENST00000360579 RCN1Q15293 331 aa10.1□□□□□ -0.79
VPS29-201ENST00000360579 UBAC2Q8NBM4 344 aa10.1□□□□□ -0.79
VPS29-201ENST00000360579 SCARB1Q8WTV0 552 aa10.1□□□□□ -0.79
VPS29-201ENST00000360579 ELF5Q9UKW6 265 aaPredicted RBP10.1□□□□□ -0.79
VPS29-201ENST00000360579 IGHV4-4A0A075B6R2 117 aa10.09□□□□□ -0.79
VPS29-201ENST00000360579 TRAV10A0A0B4J240 114 aa10.09□□□□□ -0.79
VPS29-201ENST00000360579 PRSS29PA6NIE9 313 aa10.09□□□□□ -0.79
VPS29-201ENST00000360579 TNFSF12O43508 249 aa10.09□□□□□ -0.79
VPS29-201ENST00000360579 SCGNO76038 276 aa10.09□□□□□ -0.79
VPS29-201ENST00000360579 MYL9P24844 172 aa10.09□□□□□ -0.79
VPS29-201ENST00000360579 OR10A3P58181 314 aa10.09□□□□□ -0.79
VPS29-201ENST00000360579 ARPC4P59998 168 aa10.09□□□□□ -0.79
VPS29-201ENST00000360579 Q56UQ5 140 aa10.09□□□□□ -0.79
VPS29-201ENST00000360579 TMEM41BQ5BJD5 291 aa10.09□□□□□ -0.79
VPS29-201ENST00000360579 DMBX1Q8NFW5 382 aa10.09□□□□□ -0.79
VPS29-201ENST00000360579 OR10W1Q8NGF6 305 aa10.09□□□□□ -0.79
VPS29-201ENST00000360579 SECTM1Q8WVN6 248 aa10.09□□□□□ -0.79
VPS29-201ENST00000360579 GPHA2Q96T91 129 aa10.09□□□□□ -0.79
VPS29-201ENST00000360579 VCXQ9H320 206 aa10.09□□□□□ -0.79
VPS29-201ENST00000360579 TMEM140Q9NV12 185 aa10.09□□□□□ -0.79
VPS29-201ENST00000360579 TPRKBQ9Y3C4 175 aa10.09□□□□□ -0.79
VPS29-201ENST00000360579 F11RQ9Y624 299 aaKnown RBP10.09□□□□□ -0.79
VPS29-201ENST00000360579 TRAV3A0A0B4J244 114 aa10.08□□□□□ -0.8
VPS29-201ENST00000360579 CASQ2O14958 399 aaPredicted RBP10.08□□□□□ -0.8
VPS29-201ENST00000360579 NUPL2O15504 423 aaKnown RBP10.08□□□□□ -0.8
VPS29-201ENST00000360579 DFFBO76075 338 aa10.08□□□□□ -0.8
VPS29-201ENST00000360579 HLA-DMBP28068 263 aa10.08□□□□□ -0.8
VPS29-201ENST00000360579 GNG2P59768 71 aa10.08□□□□□ -0.8
VPS29-201ENST00000360579 WT1-ASQ06250 92 aa10.08□□□□□ -0.8
VPS29-201ENST00000360579 PVRIGQ6DKI7 326 aa10.08□□□□□ -0.8
VPS29-201ENST00000360579 Q8NAQ8 132 aa10.08□□□□□ -0.8
VPS29-201ENST00000360579 OR1L8Q8NGR8 309 aa10.08□□□□□ -0.8
VPS29-201ENST00000360579 NUDCD2Q8WVJ2 157 aa10.08□□□□□ -0.8
VPS29-201ENST00000360579 LSM10Q969L4 123 aaKnown RBP10.08□□□□□ -0.8
VPS29-201ENST00000360579 OR10C1Q96KK4 312 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms