RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 WDR82Q6UXN9 313 aa18.45■□□□□ 0.54
TRIM28-202ENST00000341753 FAM19A2Q8N3H0 131 aa18.45■□□□□ 0.54
TRIM28-202ENST00000341753 TCTEX1D1Q8N7M0 179 aa18.45■□□□□ 0.54
TRIM28-202ENST00000341753 WNT10AQ9GZT5 417 aa18.45■□□□□ 0.54
TRIM28-202ENST00000341753 TMEM140Q9NV12 185 aa18.45■□□□□ 0.54
TRIM28-202ENST00000341753 TCF19Q9Y242 345 aa18.45■□□□□ 0.54
TRIM28-202ENST00000341753 SPINT2O43291 252 aa18.45■□□□□ 0.54
TRIM28-202ENST00000341753 IGFBP2P18065 325 aa18.45■□□□□ 0.54
TRIM28-202ENST00000341753 RELBQ01201 579 aa18.45■□□□□ 0.54
TRIM28-202ENST00000341753 C15orf65H3BRN8 121 aa18.44■□□□□ 0.54
TRIM28-202ENST00000341753 CHRNB4P30926 498 aa18.44■□□□□ 0.54
TRIM28-202ENST00000341753 GNG4P50150 75 aa18.44■□□□□ 0.54
TRIM28-202ENST00000341753 RHOBP62745 196 aa18.44■□□□□ 0.54
TRIM28-202ENST00000341753 NPVFQ9HCQ7 196 aa18.44■□□□□ 0.54
TRIM28-202ENST00000341753 PPP1R14DQ9NXH3 145 aa18.44■□□□□ 0.54
TRIM28-202ENST00000341753 LSM4Q9Y4Z0 139 aaKnown RBP18.44■□□□□ 0.54
TRIM28-202ENST00000341753 PTPRBP23467 1997 aa18.44■□□□□ 0.54
TRIM28-202ENST00000341753 ERVK-16P61578 105 aa18.44■□□□□ 0.54
TRIM28-202ENST00000341753 PSG5Q15238 335 aa18.44■□□□□ 0.54
TRIM28-202ENST00000341753 GABRA6Q16445 453 aa18.44■□□□□ 0.54
TRIM28-202ENST00000341753 COL5A1-AS1Q5SY13 56 aa18.44■□□□□ 0.54
TRIM28-202ENST00000341753 CD177Q8N6Q3 437 aa18.44■□□□□ 0.54
TRIM28-202ENST00000341753 FAM216AQ8WUB2 273 aa18.44■□□□□ 0.54
TRIM28-202ENST00000341753 NKX2-8O15522 239 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 CD46P15529 392 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 FABP6P51161 128 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 SUMO1P63165 101 aaKnown RBP18.43■□□□□ 0.54
TRIM28-202ENST00000341753 MRPL52Q86TS9 123 aaKnown RBP18.43■□□□□ 0.54
TRIM28-202ENST00000341753 STPG4Q8N801 248 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 FER1L6-AS2Q96M78 137 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 DNAJC4Q9NNZ3 241 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 TRGV10A0A0A0MS01 117 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 TRGV5A0A0B4J1U4 118 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 A0A1W2PS18 150 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 ZNF253O75346 499 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 IGHV1-2P23083 117 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 ZNF134P52741 427 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 TEPPQ6URK8 271 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 C1orf229Q6ZS94 237 aaPredicted RBP18.43■□□□□ 0.54
TRIM28-202ENST00000341753 MOB3BQ86TA1 216 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 WDR31Q8NA23 367 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 STARD4Q96DR4 205 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 SFXN3Q9BWM7 321 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 OPN3Q9H1Y3 402 aaPredicted RBP18.43■□□□□ 0.54
TRIM28-202ENST00000341753 CA1P00915 261 aaPredicted RBP18.43■□□□□ 0.54
TRIM28-202ENST00000341753 LINC00614P0C842 121 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 GATA2P23769 480 aaPredicted RBP18.43■□□□□ 0.54
TRIM28-202ENST00000341753 SRIP30626 198 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 ZNF83P51522 516 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 Q6ZVH6 145 aa18.43■□□□□ 0.54
TRIM28-202ENST00000341753 GMPPAQ96IJ6 420 aaPredicted RBP18.43■□□□□ 0.54
TRIM28-202ENST00000341753 HELTA6NFD8 242 aa18.42■□□□□ 0.54
TRIM28-202ENST00000341753 MAJINQ3KP22 176 aa18.42■□□□□ 0.54
TRIM28-202ENST00000341753 C1orf174Q8IYL3 243 aa18.42■□□□□ 0.54
TRIM28-202ENST00000341753 OR4B1Q8NGF8 309 aa18.42■□□□□ 0.54
TRIM28-202ENST00000341753 RNF2Q99496 336 aa18.42■□□□□ 0.54
TRIM28-202ENST00000341753 GNB1LQ9BYB4 327 aa18.42■□□□□ 0.54
TRIM28-202ENST00000341753 TRAV9-1A0A075B6T8 112 aa18.42■□□□□ 0.54
TRIM28-202ENST00000341753 NTF3P20783 257 aa18.42■□□□□ 0.54
TRIM28-202ENST00000341753 TMEM136Q6ZRR5 245 aa18.42■□□□□ 0.54
TRIM28-202ENST00000341753 NHLRC2Q8NBF2 726 aa18.42■□□□□ 0.54
TRIM28-202ENST00000341753 C11orf52Q96A22 123 aa18.42■□□□□ 0.54
TRIM28-202ENST00000341753 TXN2Q99757 166 aa18.42■□□□□ 0.54
TRIM28-202ENST00000341753 CHODLQ9H9P2 273 aa18.42■□□□□ 0.54
TRIM28-202ENST00000341753 GCM1Q9NP62 436 aa18.42■□□□□ 0.54
TRIM28-202ENST00000341753 SERTAD4Q9NUC0 356 aa18.42■□□□□ 0.54
TRIM28-202ENST00000341753 MGAQ8IWI9 3026 aa18.41■□□□□ 0.54
TRIM28-202ENST00000341753 C9JCJ5 164 aa18.41■□□□□ 0.54
TRIM28-202ENST00000341753 TIMM8AO60220 97 aaPredicted RBP18.41■□□□□ 0.54
TRIM28-202ENST00000341753 OR10J4P0C629 311 aa18.41■□□□□ 0.54
TRIM28-202ENST00000341753 CCL11P51671 97 aa18.41■□□□□ 0.54
TRIM28-202ENST00000341753 Q6ZN92 141 aa18.41■□□□□ 0.54
TRIM28-202ENST00000341753 MGST1P10620 155 aaKnown RBP18.41■□□□□ 0.54
TRIM28-202ENST00000341753 CTRLP40313 264 aa18.41■□□□□ 0.54
TRIM28-202ENST00000341753 TMPRSS3P57727 454 aa18.41■□□□□ 0.54
TRIM28-202ENST00000341753 MORN2Q502X0 79 aa18.41■□□□□ 0.54
TRIM28-202ENST00000341753 SLC35E1Q96K37 410 aa18.41■□□□□ 0.54
TRIM28-202ENST00000341753 S1PR3Q99500 378 aa18.41■□□□□ 0.54
TRIM28-202ENST00000341753 CA2P00918 260 aa18.4■□□□□ 0.54
TRIM28-202ENST00000341753 KCNS1Q96KK3 526 aa18.4■□□□□ 0.54
TRIM28-202ENST00000341753 TUBG2Q9NRH3 451 aa18.4■□□□□ 0.54
TRIM28-202ENST00000341753 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP18.4■□□□□ 0.54
TRIM28-202ENST00000341753 MT-CO2P00403 227 aa18.4■□□□□ 0.54
TRIM28-202ENST00000341753 NPY1RP25929 384 aa18.4■□□□□ 0.54
TRIM28-202ENST00000341753 AARDQ4LEZ3 155 aa18.4■□□□□ 0.54
TRIM28-202ENST00000341753 PRR31Q5SQ13 230 aa18.4■□□□□ 0.54
TRIM28-202ENST00000341753 CXXC4Q9H2H0 198 aa18.4■□□□□ 0.54
TRIM28-202ENST00000341753 CBY1Q9Y3M2 126 aa18.4■□□□□ 0.54
TRIM28-202ENST00000341753 IGHV3OR15-7A0A075B7D8 119 aa18.39■□□□□ 0.53
TRIM28-202ENST00000341753 HYPMO75409 117 aa18.39■□□□□ 0.53
TRIM28-202ENST00000341753 C3orf79P0CE67 100 aa18.39■□□□□ 0.53
TRIM28-202ENST00000341753 CX3CL1P78423 397 aa18.39■□□□□ 0.53
TRIM28-202ENST00000341753 LCN12Q6JVE5 192 aa18.39■□□□□ 0.53
TRIM28-202ENST00000341753 SLC24A4Q8NFF2 622 aa18.39■□□□□ 0.53
TRIM28-202ENST00000341753 LRRC29Q8WV35 223 aa18.39■□□□□ 0.53
TRIM28-202ENST00000341753 DUSP13Q9UII6 198 aa18.39■□□□□ 0.53
TRIM28-202ENST00000341753 ZFP30Q9Y2G7 519 aa18.39■□□□□ 0.53
TRIM28-202ENST00000341753 OTOGLQ3ZCN5 2332 aa18.39■□□□□ 0.53
TRIM28-202ENST00000341753 SPAARA0A1B0GVQ0 90 aa18.39■□□□□ 0.53
TRIM28-202ENST00000341753 NDUFB8O95169 186 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms