RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 KLK9Q9UKQ9 250 aa12.39□□□□□ -0.43
LSM1-201ENST00000311351 TENM3Q9P273 2699 aa12.39□□□□□ -0.43
LSM1-201ENST00000311351 IZUMO1RA6ND01 250 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 DBX1A6NMT0 343 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 GGCTO75223 188 aaKnown RBP12.38□□□□□ -0.43
LSM1-201ENST00000311351 OR2C1O95371 312 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 IGKV1-39P01597 117 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 IGKV1D-39P04432 117 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 IFNA6P05013 189 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 FRMD6-AS1P0C7T7 363 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 NHLRC4P0CG21 123 aaPredicted RBP12.38□□□□□ -0.43
LSM1-201ENST00000311351 TRAPPC2P0DI81 140 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 TRAPPC2BP0DI82 140 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 OR13C7P0DN81 318 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 PGAM2P15259 253 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 S100GP29377 79 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 SBSPONQ8IVN8 264 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 Q8N1Y9 231 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 OR1L8Q8NGR8 309 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 SRSF8Q9BRL6 282 aaKnown RBP12.38□□□□□ -0.43
LSM1-201ENST00000311351 ZC4H2Q9NQZ6 224 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 SIGLEC8Q9NYZ4 499 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 OR51B2Q9Y5P1 312 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 U3KQK5 164 aa12.38□□□□□ -0.43
LSM1-201ENST00000311351 MRPS10P82664 201 aaKnown RBP12.37□□□□□ -0.43
LSM1-201ENST00000311351 FAM209BQ5JX69 171 aa12.37□□□□□ -0.43
LSM1-201ENST00000311351 THOC7Q6I9Y2 204 aaKnown RBP12.37□□□□□ -0.43
LSM1-201ENST00000311351 FAAP20Q6NZ36 180 aa12.37□□□□□ -0.43
LSM1-201ENST00000311351 ARRDC1Q8N5I2 433 aa12.37□□□□□ -0.43
LSM1-201ENST00000311351 GDPD1Q8N9F7 314 aa12.37□□□□□ -0.43
LSM1-201ENST00000311351 LSM10Q969L4 123 aaKnown RBP12.37□□□□□ -0.43
LSM1-201ENST00000311351 MRGPRFQ96AM1 343 aa12.37□□□□□ -0.43
LSM1-201ENST00000311351 NDUFA4L2Q9NRX3 87 aa12.37□□□□□ -0.43
LSM1-201ENST00000311351 SELENOKQ9Y6D0 94 aa12.37□□□□□ -0.43
LSM1-201ENST00000311351 CEPT1Q9Y6K0 416 aa12.37□□□□□ -0.43
LSM1-201ENST00000311351 C15orf61A6NNL5 157 aa12.36□□□□□ -0.43
LSM1-201ENST00000311351 H0Y980 276 aa12.36□□□□□ -0.43
LSM1-201ENST00000311351 GABARAPH6UMI1 98 aa12.36□□□□□ -0.43
LSM1-201ENST00000311351 ZNF701M0R085 212 aaPredicted RBP12.36□□□□□ -0.43
LSM1-201ENST00000311351 SNAPC5O75971 98 aa12.36□□□□□ -0.43
LSM1-201ENST00000311351 CD74P04233 296 aa12.36□□□□□ -0.43
LSM1-201ENST00000311351 TBPP20226 339 aa12.36□□□□□ -0.43
LSM1-201ENST00000311351 GPR183P32249 361 aa12.36□□□□□ -0.43
LSM1-201ENST00000311351 MFAP2P55001 183 aa12.36□□□□□ -0.43
LSM1-201ENST00000311351 SCGB2B2Q4G0G5 96 aa12.36□□□□□ -0.43
LSM1-201ENST00000311351 LCN12Q6JVE5 192 aa12.36□□□□□ -0.43
LSM1-201ENST00000311351 TMEM229BQ8NBD8 167 aa12.36□□□□□ -0.43
LSM1-201ENST00000311351 ZNF502Q8TBZ5 544 aa12.36□□□□□ -0.43
LSM1-201ENST00000311351 DYNLRB2Q8TF09 96 aa12.36□□□□□ -0.43
LSM1-201ENST00000311351 CACNG8Q8WXS5 425 aa12.36□□□□□ -0.43
LSM1-201ENST00000311351 SEC22AQ96IW7 307 aa12.36□□□□□ -0.43
LSM1-201ENST00000311351 C6orf62Q9GZU0 229 aaPredicted RBP12.36□□□□□ -0.43
LSM1-201ENST00000311351 FAM212BQ9NTI7 297 aaPredicted RBP12.36□□□□□ -0.43
LSM1-201ENST00000311351 PRNDQ9UKY0 176 aa12.36□□□□□ -0.43
LSM1-201ENST00000311351 C2orf70A6NJV1 201 aa12.35□□□□□ -0.43
LSM1-201ENST00000311351 RAB3DO95716 219 aa12.35□□□□□ -0.43
LSM1-201ENST00000311351 SERPINE2P07093 398 aa12.35□□□□□ -0.43
LSM1-201ENST00000311351 IGHV4-30-4P0DP06 118 aa12.35□□□□□ -0.43
LSM1-201ENST00000311351 PTBP1P26599 531 aaKnown RBP eCLIP12.35□□□□□ -0.438e-8■■■■■ 45.8
LSM1-201ENST00000311351 MECP2P51608 486 aaKnown RBP12.35□□□□□ -0.43
LSM1-201ENST00000311351 PIGPP57054 158 aa12.35□□□□□ -0.43
LSM1-201ENST00000311351 TAS2R19P59542 299 aa12.35□□□□□ -0.43
LSM1-201ENST00000311351 RND3P61587 244 aa12.35□□□□□ -0.43
LSM1-201ENST00000311351 STEAP1BQ6NZ63 245 aa12.35□□□□□ -0.43
LSM1-201ENST00000311351 CADM3Q8N126 398 aa12.35□□□□□ -0.43
LSM1-201ENST00000311351 Q8N402 240 aa12.35□□□□□ -0.43
LSM1-201ENST00000311351 SMIM4Q8WVI0 70 aa12.35□□□□□ -0.43
LSM1-201ENST00000311351 CXorf58Q96LI9 332 aa12.35□□□□□ -0.43
LSM1-201ENST00000311351 WWC2-AS2Q96NR7 200 aa12.35□□□□□ -0.43
LSM1-201ENST00000311351 TP53RKQ96S44 253 aa12.35□□□□□ -0.43
LSM1-201ENST00000311351 THAP7Q9BT49 309 aaPredicted RBP12.35□□□□□ -0.43
LSM1-201ENST00000311351 TMEM14BQ9NUH8 114 aa12.35□□□□□ -0.43
LSM1-201ENST00000311351 RSL24D1Q9UHA3 163 aaKnown RBP12.35□□□□□ -0.43
LSM1-201ENST00000311351 TRBV7-1A0A0A6YYK4 115 aa12.34□□□□□ -0.43
LSM1-201ENST00000311351 IGHV3-21A0A0B4J1V1 117 aa12.34□□□□□ -0.43
LSM1-201ENST00000311351 CLEC3BP05452 202 aa12.34□□□□□ -0.43
LSM1-201ENST00000311351 FOLR2P14207 255 aa12.34□□□□□ -0.43
LSM1-201ENST00000311351 SSBP1Q04837 148 aaKnown RBP12.34□□□□□ -0.43
LSM1-201ENST00000311351 IL18Q14116 193 aa12.34□□□□□ -0.43
LSM1-201ENST00000311351 IZUMO4Q1ZYL8 232 aa12.34□□□□□ -0.43
LSM1-201ENST00000311351 CD300EQ496F6 205 aaPredicted RBP12.34□□□□□ -0.43
LSM1-201ENST00000311351 SLC25A24Q6NUK1 477 aa12.34□□□□□ -0.43
LSM1-201ENST00000311351 H2BFWTQ7Z2G1 175 aa12.34□□□□□ -0.43
LSM1-201ENST00000311351 HSD17B13Q7Z5P4 300 aaPredicted RBP12.34□□□□□ -0.43
LSM1-201ENST00000311351 SGPP2Q8IWX5 399 aa12.34□□□□□ -0.43
LSM1-201ENST00000311351 OR13C8Q8NGS7 320 aa12.34□□□□□ -0.43
LSM1-201ENST00000311351 OR5B3Q8NH48 314 aa12.34□□□□□ -0.43
LSM1-201ENST00000311351 ZNF486Q96H40 463 aaPredicted RBP12.34□□□□□ -0.43
LSM1-201ENST00000311351 DIRAS2Q96HU8 199 aa12.34□□□□□ -0.43
LSM1-201ENST00000311351 TSC22D3Q99576 134 aa12.34□□□□□ -0.43
LSM1-201ENST00000311351 F11RQ9Y624 299 aaKnown RBP12.34□□□□□ -0.43
LSM1-201ENST00000311351 IGHV3-35A0A0C4DH35 117 aa12.33□□□□□ -0.44
LSM1-201ENST00000311351 ZNF320A2RRD8 509 aa12.33□□□□□ -0.44
LSM1-201ENST00000311351 TMEM213A2RRL7 107 aa12.33□□□□□ -0.44
LSM1-201ENST00000311351 LGALS9O00182 355 aa12.33□□□□□ -0.44
LSM1-201ENST00000311351 UNQ9165/PRO28630Q6UXU0 137 aa12.33□□□□□ -0.44
LSM1-201ENST00000311351 GPHB5Q86YW7 130 aa12.33□□□□□ -0.44
LSM1-201ENST00000311351 MCFD2Q8NI22 146 aa12.33□□□□□ -0.44
LSM1-201ENST00000311351 MARCH1Q8TCQ1 289 aa12.33□□□□□ -0.44
LSM1-201ENST00000311351 SLIRPQ9GZT3 109 aaKnown RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms