RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 COMPP49747 757 aaPredicted RBP16.24■□□□□ 0.19
USP48-201ENST00000308271 HGFACQ04756 655 aa16.24■□□□□ 0.19
USP48-201ENST00000308271 RPL39P5Q59GN2 51 aa16.24■□□□□ 0.19
USP48-201ENST00000308271 OR10J3Q5JRS4 329 aa16.24■□□□□ 0.19
USP48-201ENST00000308271 SCGB1D4Q6XE38 83 aa16.24■□□□□ 0.19
USP48-201ENST00000308271 ZIC4Q8N9L1 334 aa16.24■□□□□ 0.19
USP48-201ENST00000308271 STAG3L2P0CL84 134 aa16.24■□□□□ 0.19
USP48-201ENST00000308271 AKIRIN1Q9H9L7 192 aaPredicted RBP16.24■□□□□ 0.19
USP48-201ENST00000308271 IGHV3-21A0A0B4J1V1 117 aa16.24■□□□□ 0.19
USP48-201ENST00000308271 HOXA4Q00056 320 aaPredicted RBP16.24■□□□□ 0.19
USP48-201ENST00000308271 PPP1R32Q7Z5V6 425 aa16.24■□□□□ 0.19
USP48-201ENST00000308271 RNASEH2CQ8TDP1 164 aaKnown RBP16.24■□□□□ 0.19
USP48-201ENST00000308271 TMEM42Q69YG0 159 aa16.24■□□□□ 0.19
USP48-201ENST00000308271 TMEM14EPQ6UXP3 125 aa16.24■□□□□ 0.19
USP48-201ENST00000308271 Q6ZS49 121 aa16.24■□□□□ 0.19
USP48-201ENST00000308271 NPIPB3Q92617 1050 aa16.24■□□□□ 0.19
USP48-201ENST00000308271 SOX21Q9Y651 276 aaPredicted RBP16.24■□□□□ 0.19
USP48-201ENST00000308271 SCN5AQ14524 2016 aa16.23■□□□□ 0.19
USP48-201ENST00000308271 OR13A1Q8NGR1 328 aa16.23■□□□□ 0.19
USP48-201ENST00000308271 ZNF716A6NP11 495 aa16.23■□□□□ 0.19
USP48-201ENST00000308271 MIR17HGQ75NE6 70 aa16.23■□□□□ 0.19
USP48-201ENST00000308271 TRAV9-2A0A087WT02 112 aa16.23■□□□□ 0.19
USP48-201ENST00000308271 APELAP0DMC3 54 aa16.23■□□□□ 0.19
USP48-201ENST00000308271 CKS2P33552 79 aa16.23■□□□□ 0.19
USP48-201ENST00000308271 SRSF12Q8WXF0 261 aaKnown RBP16.23■□□□□ 0.19
USP48-201ENST00000308271 LEAP2Q969E1 77 aa16.23■□□□□ 0.19
USP48-201ENST00000308271 IFI27L2Q9H2X8 130 aa16.23■□□□□ 0.19
USP48-201ENST00000308271 GP6Q9HCN6 339 aa16.23■□□□□ 0.19
USP48-201ENST00000308271 RAMP3O60896 148 aa16.23■□□□□ 0.19
USP48-201ENST00000308271 KIR2DL2P43627 348 aaPredicted RBP16.23■□□□□ 0.19
USP48-201ENST00000308271 TMEM256Q8N2U0 113 aa16.23■□□□□ 0.19
USP48-201ENST00000308271 MRPS18CQ9Y3D5 142 aaKnown RBP16.23■□□□□ 0.19
USP48-201ENST00000308271 PLXNA4Q9HCM2 1894 aa16.22■□□□□ 0.19
USP48-201ENST00000308271 SGK494Q96LW2 274 aa16.22■□□□□ 0.19
USP48-201ENST00000308271 MESP1Q9BRJ9 268 aa16.22■□□□□ 0.19
USP48-201ENST00000308271 ZNF703Q9H7S9 590 aaPredicted RBP16.22■□□□□ 0.19
USP48-201ENST00000308271 LOC102723996A0A087X1L8 192 aa16.22■□□□□ 0.19
USP48-201ENST00000308271 A6NNC1 897 aa16.22■□□□□ 0.19
USP48-201ENST00000308271 PEX7O00628 323 aa16.22■□□□□ 0.19
USP48-201ENST00000308271 TFPI2P48307 235 aa16.22■□□□□ 0.19
USP48-201ENST00000308271 CDCP2Q5VXM1 449 aa16.22■□□□□ 0.19
USP48-201ENST00000308271 HCP5Q6MZN7 132 aa16.22■□□□□ 0.19
USP48-201ENST00000308271 TMEM144Q7Z5S9 345 aa16.22■□□□□ 0.19
USP48-201ENST00000308271 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.22■□□□□ 0.19
USP48-201ENST00000308271 RAB37Q96AX2 223 aa16.22■□□□□ 0.19
USP48-201ENST00000308271 HES7Q9BYE0 225 aa16.22■□□□□ 0.19
USP48-201ENST00000308271 CSRP1P21291 193 aaKnown RBP16.22■□□□□ 0.19
USP48-201ENST00000308271 KRTCAP3Q53RY4 240 aa16.22■□□□□ 0.19
USP48-201ENST00000308271 RNASE7Q9H1E1 156 aaKnown RBP16.22■□□□□ 0.19
USP48-201ENST00000308271 TCTAP57738 103 aa16.21■□□□□ 0.19
USP48-201ENST00000308271 ARF6P62330 175 aa16.21■□□□□ 0.19
USP48-201ENST00000308271 RPL30P62888 115 aaKnown RBP16.21■□□□□ 0.19
USP48-201ENST00000308271 C1orf210Q8IVY1 113 aa16.21■□□□□ 0.19
USP48-201ENST00000308271 PPIAL4EA0A075B759 164 aa16.21■□□□□ 0.19
USP48-201ENST00000308271 PPIAL4DF5H284 164 aa16.21■□□□□ 0.19
USP48-201ENST00000308271 IGKV1-5P01602 117 aa16.21■□□□□ 0.19
USP48-201ENST00000308271 PPIAL4FP0DN26 164 aa16.21■□□□□ 0.19
USP48-201ENST00000308271 IL15RAQ13261 267 aa16.21■□□□□ 0.19
USP48-201ENST00000308271 MMDQ15546 238 aa16.21■□□□□ 0.19
USP48-201ENST00000308271 NEU1Q99519 415 aa16.21■□□□□ 0.19
USP48-201ENST00000308271 PPIAL4AQ9Y536 164 aa16.21■□□□□ 0.19
USP48-201ENST00000308271 ABCA7Q8IZY2 2146 aa16.21■□□□□ 0.19
USP48-201ENST00000308271 GCSHP23434 173 aa16.21■□□□□ 0.19
USP48-201ENST00000308271 RPL13AP40429 203 aaKnown RBP16.21■□□□□ 0.19
USP48-201ENST00000308271 STAG3L3P0CL85 134 aa16.21■□□□□ 0.18
USP48-201ENST00000308271 ASCL4Q6XD76 172 aa16.21■□□□□ 0.18
USP48-201ENST00000308271 OR4C13Q8NGP0 309 aa16.21■□□□□ 0.18
USP48-201ENST00000308271 SRSF9Q13242 221 aaKnown RBP eCLIP16.2■□□□□ 0.18
USP48-201ENST00000308271 KLF7O75840 302 aaPredicted RBP16.2■□□□□ 0.18
USP48-201ENST00000308271 BMI1P35226 326 aa16.2■□□□□ 0.18
USP48-201ENST00000308271 GCSAMLQ5JQS6 135 aa16.2■□□□□ 0.18
USP48-201ENST00000308271 ELOVL5Q9NYP7 299 aa16.2■□□□□ 0.18
USP48-201ENST00000308271 PFN1P07737 140 aaKnown RBP16.2■□□□□ 0.18
USP48-201ENST00000308271 HERVK_113P61574 105 aa16.2■□□□□ 0.18
USP48-201ENST00000308271 SIGLEC12Q96PQ1 595 aa16.2■□□□□ 0.18
USP48-201ENST00000308271 TWIST1Q15672 202 aa16.19■□□□□ 0.18
USP48-201ENST00000308271 FGFBP3Q8TAT2 258 aa16.19■□□□□ 0.18
USP48-201ENST00000308271 CACNG8Q8WXS5 425 aa16.19■□□□□ 0.18
USP48-201ENST00000308271 PHF3Q92576 2039 aaKnown RBP16.19■□□□□ 0.18
USP48-201ENST00000308271 PLXND1Q9Y4D7 1925 aa16.19■□□□□ 0.18
USP48-201ENST00000308271 PRR33A8MZF0 331 aa16.19■□□□□ 0.18
USP48-201ENST00000308271 LYPD6BQ8NI32 183 aa16.19■□□□□ 0.18
USP48-201ENST00000308271 A0A0G2JMM0 328 aa16.19■□□□□ 0.18
USP48-201ENST00000308271 A0A1W2PPB8 328 aa16.19■□□□□ 0.18
USP48-201ENST00000308271 A0A1W2PRE2 83 aa16.19■□□□□ 0.18
USP48-201ENST00000308271 A0A1W2PRS3 328 aa16.19■□□□□ 0.18
USP48-201ENST00000308271 A1L4Q6 167 aa16.19■□□□□ 0.18
USP48-201ENST00000308271 KIR3DP1A8MWS1 328 aa16.19■□□□□ 0.18
USP48-201ENST00000308271 RBFOX2O43251 390 aaKnown RBP eCLIP16.19■□□□□ 0.18
USP48-201ENST00000308271 FBLN7Q53RD9 439 aa16.19■□□□□ 0.18
USP48-201ENST00000308271 SAPCD1Q5SSQ6 148 aa16.19■□□□□ 0.18
USP48-201ENST00000308271 ST6GALNAC6Q969X2 333 aa16.19■□□□□ 0.18
USP48-201ENST00000308271 EREGO14944 169 aa16.19■□□□□ 0.18
USP48-201ENST00000308271 GDF9O60383 454 aa16.19■□□□□ 0.18
USP48-201ENST00000308271 SPEM2Q0P670 501 aa16.19■□□□□ 0.18
USP48-201ENST00000308271 SLC25A17O43808 307 aa16.18■□□□□ 0.18
USP48-201ENST00000308271 NBEAP1P0C6P0 100 aa16.18■□□□□ 0.18
USP48-201ENST00000308271 PSG7Q13046 419 aa16.18■□□□□ 0.18
USP48-201ENST00000308271 EFNB3Q15768 340 aa16.18■□□□□ 0.18
USP48-201ENST00000308271 GFRALQ6UXV0 394 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms