RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 DEDDO75618 318 aa14.42□□□□□ -0.1
CLN3-262ENST00000637699 IGLV2-14P01704 120 aa14.42□□□□□ -0.1
CLN3-262ENST00000637699 HLA-DQB1P01920 261 aa14.42□□□□□ -0.1
CLN3-262ENST00000637699 CTRB1P17538 263 aa14.42□□□□□ -0.1
CLN3-262ENST00000637699 MAS1LP35410 378 aa14.42□□□□□ -0.1
CLN3-262ENST00000637699 CTRB2Q6GPI1 263 aa14.42□□□□□ -0.1
CLN3-262ENST00000637699 SSX9Q7RTT3 188 aa14.42□□□□□ -0.1
CLN3-262ENST00000637699 OR2C3Q8N628 320 aa14.42□□□□□ -0.1
CLN3-262ENST00000637699 OR4S2Q8NH73 311 aa14.42□□□□□ -0.1
CLN3-262ENST00000637699 MARC2Q969Z3 335 aa14.42□□□□□ -0.1
CLN3-262ENST00000637699 TRBV7-1A0A0A6YYK4 115 aa14.41□□□□□ -0.1
CLN3-262ENST00000637699 IGKV1D-13A0A0B4J2D9 117 aa14.41□□□□□ -0.1
CLN3-262ENST00000637699 METTL21EPA6NDL7 271 aa14.41□□□□□ -0.1
CLN3-262ENST00000637699 C8orf88P0DMB2 117 aa14.41□□□□□ -0.1
CLN3-262ENST00000637699 IGKV1-13P0DP09 117 aa14.41□□□□□ -0.1
CLN3-262ENST00000637699 HIST1H1BP16401 226 aaKnown RBP14.41□□□□□ -0.1
CLN3-262ENST00000637699 SLC38A6Q8IZM9 456 aa14.41□□□□□ -0.1
CLN3-262ENST00000637699 ATG5Q9H1Y0 275 aa14.41□□□□□ -0.1
CLN3-262ENST00000637699 MRPL27Q9P0M9 148 aaKnown RBP14.41□□□□□ -0.1
CLN3-262ENST00000637699 RRP15Q9Y3B9 282 aaKnown RBP14.41□□□□□ -0.1
CLN3-262ENST00000637699 IGLV11-55A0A075B6I3 123 aa14.4□□□□□ -0.1
CLN3-262ENST00000637699 NOTOA8MTQ0 251 aa14.4□□□□□ -0.1
CLN3-262ENST00000637699 SLC22A5O76082 557 aa14.4□□□□□ -0.1
CLN3-262ENST00000637699 DTYMKP23919 212 aa14.4□□□□□ -0.1
CLN3-262ENST00000637699 GPR183P32249 361 aa14.4□□□□□ -0.1
CLN3-262ENST00000637699 BRWD1-AS2P59051 145 aa14.4□□□□□ -0.1
CLN3-262ENST00000637699 CXorf58Q96LI9 332 aa14.4□□□□□ -0.1
CLN3-262ENST00000637699 GPHA2Q96T91 129 aa14.4□□□□□ -0.1
CLN3-262ENST00000637699 HSD17B10Q99714 261 aaKnown RBP14.4□□□□□ -0.1
CLN3-262ENST00000637699 RNF167Q9H6Y7 350 aa14.4□□□□□ -0.1
CLN3-262ENST00000637699 TAS2R8Q9NYW2 309 aa14.4□□□□□ -0.1
CLN3-262ENST00000637699 SSR3Q9UNL2 185 aa14.4□□□□□ -0.1
CLN3-262ENST00000637699 CTXN2P0C2S0 81 aa14.39□□□□□ -0.11
CLN3-262ENST00000637699 RPL8P62917 257 aaKnown RBP14.39□□□□□ -0.11
CLN3-262ENST00000637699 KLK9Q2XQG4 91 aa14.39□□□□□ -0.11
CLN3-262ENST00000637699 CDNFQ49AH0 187 aa14.39□□□□□ -0.11
CLN3-262ENST00000637699 TPRA1Q86W33 373 aa14.39□□□□□ -0.11
CLN3-262ENST00000637699 MFSD4AQ8N468 514 aa14.39□□□□□ -0.11
CLN3-262ENST00000637699 STPG3Q8N7X2 389 aa14.39□□□□□ -0.11
CLN3-262ENST00000637699 KLK9Q9UKQ9 250 aa14.39□□□□□ -0.11
CLN3-262ENST00000637699 UFC1Q9Y3C8 167 aa14.39□□□□□ -0.11
CLN3-262ENST00000637699 PCLOQ9Y6V0 5065 aa14.39□□□□□ -0.11
CLN3-262ENST00000637699 VPS13DQ5THJ4 4388 aa14.38□□□□□ -0.11
CLN3-262ENST00000637699 CGB1A6NKQ9 187 aa14.38□□□□□ -0.11
CLN3-262ENST00000637699 UBE2CO00762 179 aa14.38□□□□□ -0.11
CLN3-262ENST00000637699 HRASP01112 189 aa14.38□□□□□ -0.11
CLN3-262ENST00000637699 CLEC2LP0C7M8 214 aa14.38□□□□□ -0.11
CLN3-262ENST00000637699 HLA-GP17693 338 aa14.38□□□□□ -0.11
CLN3-262ENST00000637699 SDC2P34741 201 aa14.38□□□□□ -0.11
CLN3-262ENST00000637699 EIF4EBP1Q13541 118 aaPredicted RBP14.38□□□□□ -0.11
CLN3-262ENST00000637699 NEDD8Q15843 81 aa14.38□□□□□ -0.11
CLN3-262ENST00000637699 PLET1Q6UQ28 207 aa14.38□□□□□ -0.11
CLN3-262ENST00000637699 PHLDA1Q8WV24 401 aaPredicted RBP14.38□□□□□ -0.11
CLN3-262ENST00000637699 RNF183Q96D59 192 aa14.38□□□□□ -0.11
CLN3-262ENST00000637699 SPAG8Q99932 426 aaPredicted RBP14.38□□□□□ -0.11
CLN3-262ENST00000637699 C5orf66Q9H5L9 145 aa14.38□□□□□ -0.11
CLN3-262ENST00000637699 DAPK2Q9UIK4 370 aa14.38□□□□□ -0.11
CLN3-262ENST00000637699 RPL35AP18077 110 aaKnown RBP14.37□□□□□ -0.11
CLN3-262ENST00000637699 ATF4P18848 351 aaPredicted RBP14.37□□□□□ -0.11
CLN3-262ENST00000637699 ELLP55199 621 aaPredicted RBP14.37□□□□□ -0.11
CLN3-262ENST00000637699 MXD1Q05195 221 aa14.37□□□□□ -0.11
CLN3-262ENST00000637699 KCTD21Q4G0X4 260 aa14.37□□□□□ -0.11
CLN3-262ENST00000637699 TMEM217Q8N7C4 229 aa14.37□□□□□ -0.11
CLN3-262ENST00000637699 ZNF502Q8TBZ5 544 aa14.37□□□□□ -0.11
CLN3-262ENST00000637699 RPA2P15927 270 aa14.36□□□□□ -0.11
CLN3-262ENST00000637699 ARL6IP1Q15041 203 aa14.36□□□□□ -0.11
CLN3-262ENST00000637699 HACD4Q5VWC8 232 aa14.36□□□□□ -0.11
CLN3-262ENST00000637699 SFXN4Q6P4A7 337 aa14.36□□□□□ -0.11
CLN3-262ENST00000637699 CNIH2Q6PI25 160 aa14.36□□□□□ -0.11
CLN3-262ENST00000637699 NUDCD2Q8WVJ2 157 aa14.36□□□□□ -0.11
CLN3-262ENST00000637699 HRASLSQ9HDD0 168 aa14.36□□□□□ -0.11
CLN3-262ENST00000637699 KIR2DL5BA0A0G2JN68 375 aa14.35□□□□□ -0.11
CLN3-262ENST00000637699 KIR2DL5BA0A0G2JPC4 375 aa14.35□□□□□ -0.11
CLN3-262ENST00000637699 LOC100506127A0A0U1RQW1 187 aa14.35□□□□□ -0.11
CLN3-262ENST00000637699 TSPAN4O14817 238 aa14.35□□□□□ -0.11
CLN3-262ENST00000637699 TNFSF12O43508 249 aa14.35□□□□□ -0.11
CLN3-262ENST00000637699 OR2B8PP59922 312 aa14.35□□□□□ -0.11
CLN3-262ENST00000637699 ODF3L2Q3SX64 289 aa14.35□□□□□ -0.11
CLN3-262ENST00000637699 LGALS9CQ6DKI2 356 aa14.35□□□□□ -0.11
CLN3-262ENST00000637699 ZNF66Q6ZN08 573 aa14.35□□□□□ -0.11
CLN3-262ENST00000637699 KIR2DL5AQ8N109 375 aa14.35□□□□□ -0.11
CLN3-262ENST00000637699 KIR2DL5BQ8NHK3 375 aa14.35□□□□□ -0.11
CLN3-262ENST00000637699 LGALS14Q8TCE9 139 aa14.35□□□□□ -0.11
CLN3-262ENST00000637699 ZNF436Q9C0F3 470 aaPredicted RBP14.35□□□□□ -0.11
CLN3-262ENST00000637699 DCSTAMPQ9H295 470 aa14.35□□□□□ -0.11
CLN3-262ENST00000637699 IGLC7A0M8Q6 106 aa14.34□□□□□ -0.11
CLN3-262ENST00000637699 S1PR2O95136 353 aa14.34□□□□□ -0.11
CLN3-262ENST00000637699 PTBP1P26599 531 aaKnown RBP eCLIP14.34□□□□□ -0.11
CLN3-262ENST00000637699 TIMM50Q3ZCQ8 353 aa14.34□□□□□ -0.11
CLN3-262ENST00000637699 LAMTOR1Q6IAA8 161 aa14.34□□□□□ -0.11
CLN3-262ENST00000637699 OR5B3Q8NH48 314 aa14.34□□□□□ -0.11
CLN3-262ENST00000637699 OR4A5Q8NH83 315 aa14.34□□□□□ -0.11
CLN3-262ENST00000637699 BET1LQ9NYM9 111 aa14.34□□□□□ -0.11
CLN3-262ENST00000637699 HECTD4Q9Y4D8 3996 aa14.34□□□□□ -0.11
CLN3-262ENST00000637699 KIAA1109Q2LD37 5005 aa14.33□□□□□ -0.11
CLN3-262ENST00000637699 TRAV3A0A0B4J244 114 aa14.33□□□□□ -0.12
CLN3-262ENST00000637699 TMEM235A6NFC5 223 aa14.33□□□□□ -0.12
CLN3-262ENST00000637699 TGOLN2O43493 480 aa14.33□□□□□ -0.12
CLN3-262ENST00000637699 FCGR2BP31994 310 aaPredicted RBP14.33□□□□□ -0.12
CLN3-262ENST00000637699 SPAG16Q8N0X2 631 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms