RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 OR5C1Q8NGR4 320 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 OR1L8Q8NGR8 309 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 CFHR4Q92496 578 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 MALSU1Q96EH3 234 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 SRSF8Q9BRL6 282 aaKnown RBP8.53□□□□□ -1.04
CLN3-248ENST00000636355 GINS3Q9BRX5 216 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 GGACTQ9BVM4 153 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 PLEKHA3Q9HB20 300 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 ENY2Q9NPA8 101 aa8.53□□□□□ -1.04
CLN3-248ENST00000636355 CENPEQ02224 2701 aa8.52□□□□□ -1.04
CLN3-248ENST00000636355 CRYBG3Q68DQ2 2970 aa8.52□□□□□ -1.04
CLN3-248ENST00000636355 FBN2P35556 2912 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 TIMM23O14925 209 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 KCNAB3O43448 404 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 TSPAN9O75954 239 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 NXPH3O95157 252 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 OR8U8P0C7N1 319 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 SPP1P10451 314 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 IAPPP10997 89 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 NHLH2Q02577 135 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 KLRD1Q13241 179 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 EBI3Q14213 229 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 DIAPH2-AS1Q14236 149 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 SPANXN5Q5MJ07 72 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 MOB3BQ86TA1 216 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 THNSL2Q86YJ6 484 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 LILRB2Q8N423 598 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 RNF141Q8WVD5 230 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 TMEM147Q9BVK8 224 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 COMMD5Q9GZQ3 224 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 MMP26Q9NRE1 261 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 OR51B2Q9Y5P1 312 aa8.52□□□□□ -1.05
CLN3-248ENST00000636355 UTP20O75691 2785 aaKnown RBP8.52□□□□□ -1.05
CLN3-248ENST00000636355 PRRC2AP48634 2157 aaKnown RBP8.52□□□□□ -1.05
CLN3-248ENST00000636355 LINC00862A6NCI5 91 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 SRRM4A7MD48 611 aaKnown RBP8.51□□□□□ -1.05
CLN3-248ENST00000636355 C15orf62A8K5M9 175 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 UMAD1C9J7I0 102 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 H3BP45 60 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 TRIM77I1YAP6 450 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 CST7O76096 145 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 NDUFA3O95167 84 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 MOSP00540 346 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 IFNA5P01569 189 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 NMBP08949 121 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 DYNLT3P51808 116 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 F2RL1P55085 397 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 BPIFB3P59826 476 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 RAB11AP62491 216 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 SLC38A11Q08AI6 406 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 VWC2Q2TAL6 325 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 BSXQ3C1V8 233 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 HIST2H2BCQ6DN03 193 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 SLC24A4Q8NFF2 622 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 NPBQ8NG41 125 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 OR10P1Q8NGE3 313 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 OR2T10Q8NGZ9 312 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 ZDHHC16Q969W1 377 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 SAT2Q96F10 170 aaPredicted RBP8.51□□□□□ -1.05
CLN3-248ENST00000636355 OR4C12Q96R67 309 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 PSMG3Q9BT73 122 aaPredicted RBP8.51□□□□□ -1.05
CLN3-248ENST00000636355 HEYLQ9NQ87 328 aaPredicted RBP8.51□□□□□ -1.05
CLN3-248ENST00000636355 AUP1Q9Y679 476 aa8.51□□□□□ -1.05
CLN3-248ENST00000636355 TRAV3A0A0B4J244 114 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 NUDT19A8MXV4 375 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 NPFFO15130 113 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 FGF16O43320 207 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 SLC25A17O43808 307 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 MPDU1O75352 247 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 CRYGBP07316 175 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 METTL15P1P0C7V9 234 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 NPY1RP25929 384 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 BRS3P32247 399 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 SAA4P35542 130 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 COMPP49747 757 aaPredicted RBP8.5□□□□□ -1.05
CLN3-248ENST00000636355 SULT1A2P50226 295 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 DLK1P80370 383 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 TMEM267Q0VDI3 215 aaPredicted RBP8.5□□□□□ -1.05
CLN3-248ENST00000636355 CLINT1Q14677 625 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 PRSS8Q16651 343 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 Q5PR19 223 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 DPPA3Q6W0C5 159 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 PPP1R27Q86WC6 154 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 PDZD9Q8IXQ8 264 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 LINC01356Q8N9X3 169 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 ZNF114Q8NC26 417 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 TMED6Q8WW62 240 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 NRGNQ92686 78 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 SMIM3Q9BZL3 60 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 ZNF430Q9H8G1 570 aaPredicted RBP8.5□□□□□ -1.05
CLN3-248ENST00000636355 NDUFA4L2Q9NRX3 87 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 KCNIP2Q9NS61 270 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 KIAA1456Q9P272 454 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 SIGLEC9Q9Y336 463 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 TIMM9Q9Y5J7 89 aa8.5□□□□□ -1.05
CLN3-248ENST00000636355 APCP25054 2843 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 CR1P17927 2039 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 NAV3Q8IVL0 2385 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 MED13LQ71F56 2210 aa8.49□□□□□ -1.05
CLN3-248ENST00000636355 POLQO75417 2590 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms