RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 METRNQ9UJH8 293 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 WIPI2Q9Y4P8 454 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 TRGV10A0A0A0MS01 117 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 LINC00473A8K010 186 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 J3QR06 171 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 MPDU1O75352 247 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 COL5A1-AS1Q5SY13 56 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 BCL2L2Q92843 193 aaPredicted RBP10.53□□□□□ -0.72
LIG1-221ENST00000613670 YPEL4Q96NS1 127 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 RNASE7Q9H1E1 156 aaKnown RBP10.53□□□□□ -0.72
LIG1-221ENST00000613670 TECRQ9NZ01 308 aaKnown RBP10.53□□□□□ -0.72
LIG1-221ENST00000613670 IL19Q9UHD0 177 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 WDR83OSQ9Y284 106 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 SSUH2Q9Y2M2 353 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 RTL8BQ17RB0 113 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 FAM201AQ5SY85 155 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 SPATA31B1PQ5VZV4 182 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 FOXJ2Q9P0K8 574 aa10.53□□□□□ -0.72
LIG1-221ENST00000613670 IGFBP2P18065 325 aa10.52□□□□□ -0.72
LIG1-221ENST00000613670 WDR73Q6P4I2 378 aa10.52□□□□□ -0.72
LIG1-221ENST00000613670 ZPBPQ9BS86 351 aa10.52□□□□□ -0.72
LIG1-221ENST00000613670 AGMATQ9BSE5 352 aa10.52□□□□□ -0.72
LIG1-221ENST00000613670 TMEM210A6NLX4 147 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 APELAP0DMC3 54 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 REG1BP48304 166 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 SLC35E4Q6ICL7 350 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 Q6ZSR3 168 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 TCTEX1D1Q8N7M0 179 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 TMEM167BQ9NRX6 74 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 TBL2Q9Y4P3 447 aaKnown RBP10.52□□□□□ -0.73
LIG1-221ENST00000613670 INTS1Q8N201 2190 aaKnown RBP10.52□□□□□ -0.73
LIG1-221ENST00000613670 M0R2Z0 102 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 IL18BPO95998 194 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 TIMP3P35625 211 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 OPRK1P41145 380 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 ERHP84090 104 aaKnown RBP10.52□□□□□ -0.73
LIG1-221ENST00000613670 FOXF2Q12947 444 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 GABRA6Q16445 453 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 C22orf15Q8WYQ4 148 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 IL36BQ9NZH7 164 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 POLR3KQ9Y2Y1 108 aaPredicted RBP10.52□□□□□ -0.73
LIG1-221ENST00000613670 IGKV3D-15A0A087WSY6 115 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 MKRN2OSH3BPM6 223 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 APOA2P02652 100 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 ZFP36L1Q07352 338 aaKnown RBP10.52□□□□□ -0.73
LIG1-221ENST00000613670 IBA57Q5T440 356 aaKnown RBP10.52□□□□□ -0.73
LIG1-221ENST00000613670 MIR17HGQ75NE6 70 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 BEND2Q8NDZ0 799 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 OR2D3Q8NGH3 330 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 AP1S3Q96PC3 154 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 PROCRQ9UNN8 238 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 ZNF835Q9Y2P0 537 aa10.52□□□□□ -0.73
LIG1-221ENST00000613670 SZT2Q5T011 3432 aa10.51□□□□□ -0.73
LIG1-221ENST00000613670 MED13Q9UHV7 2174 aa10.51□□□□□ -0.73
LIG1-221ENST00000613670 PLCE1Q9P212 2302 aa10.51□□□□□ -0.73
LIG1-221ENST00000613670 TRAV3A0A0B4J244 114 aa10.51□□□□□ -0.73
LIG1-221ENST00000613670 CA2P00918 260 aa10.51□□□□□ -0.73
LIG1-221ENST00000613670 APCSP02743 223 aa10.51□□□□□ -0.73
LIG1-221ENST00000613670 ORM2P19652 201 aa10.51□□□□□ -0.73
LIG1-221ENST00000613670 TNFSF4P23510 183 aa10.51□□□□□ -0.73
LIG1-221ENST00000613670 C1orf194Q5T5A4 169 aa10.51□□□□□ -0.73
LIG1-221ENST00000613670 STUMQ69YW2 141 aa10.51□□□□□ -0.73
LIG1-221ENST00000613670 ACP7Q6ZNF0 438 aa10.51□□□□□ -0.73
LIG1-221ENST00000613670 SEPSECSQ9HD40 501 aaKnown RBP10.51□□□□□ -0.73
LIG1-221ENST00000613670 MED13LQ71F56 2210 aa10.51□□□□□ -0.73
LIG1-221ENST00000613670 RBFOX2O43251 390 aaKnown RBP eCLIP10.51□□□□□ -0.732e-6■□□□□ 9.8
LIG1-221ENST00000613670 ARSJQ5FYB0 599 aaPredicted RBP10.51□□□□□ -0.73
LIG1-221ENST00000613670 TREML4Q6UXN2 200 aa10.51□□□□□ -0.73
LIG1-221ENST00000613670 ELOVL5Q9NYP7 299 aa10.51□□□□□ -0.73
LIG1-221ENST00000613670 OR51B2Q9Y5P1 312 aa10.51□□□□□ -0.73
LIG1-221ENST00000613670 CA1P00915 261 aaPredicted RBP10.51□□□□□ -0.73
LIG1-221ENST00000613670 RNASEH2CQ8TDP1 164 aaKnown RBP10.51□□□□□ -0.73
LIG1-221ENST00000613670 NABP2Q9BQ15 211 aa10.51□□□□□ -0.73
LIG1-221ENST00000613670 AKAP6Q13023 2319 aa10.5□□□□□ -0.73
LIG1-221ENST00000613670 INO80CQ6PI98 192 aaPredicted RBP10.5□□□□□ -0.73
LIG1-221ENST00000613670 TRBV6-6A0A0A6YYG2 114 aa10.5□□□□□ -0.73
LIG1-221ENST00000613670 C15orf62A8K5M9 175 aa10.5□□□□□ -0.73
LIG1-221ENST00000613670 CSN3P07498 182 aa10.5□□□□□ -0.73
LIG1-221ENST00000613670 PLGLAQ15195 96 aa10.5□□□□□ -0.73
LIG1-221ENST00000613670 WDR86Q86TI4 376 aa10.5□□□□□ -0.73
LIG1-221ENST00000613670 TNCP24821 2201 aa10.5□□□□□ -0.73
LIG1-221ENST00000613670 ACACAQ13085 2346 aa10.5□□□□□ -0.73
LIG1-221ENST00000613670 NUPR1O60356 82 aa10.5□□□□□ -0.73
LIG1-221ENST00000613670 FOXH1O75593 365 aa10.5□□□□□ -0.73
LIG1-221ENST00000613670 SLC25A5P05141 298 aaKnown RBP10.5□□□□□ -0.73
LIG1-221ENST00000613670 GMPPAQ96IJ6 420 aaPredicted RBP10.5□□□□□ -0.73
LIG1-221ENST00000613670 TXNDC17Q9BRA2 123 aa10.5□□□□□ -0.73
LIG1-221ENST00000613670 MIEN1Q9BRT3 115 aa10.5□□□□□ -0.73
LIG1-221ENST00000613670 IGHV3-21A0A0B4J1V1 117 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 MYOD1P15172 320 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 LMO1P25800 156 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 RAB7AP51149 207 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 HSPE1P61604 102 aaKnown RBP10.49□□□□□ -0.73
LIG1-221ENST00000613670 FAM214BQ7L5A3 538 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 ZNF295-AS1Q8N0V1 137 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 OR10X1Q8NGY0 326 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 GGTLC1Q9BX51 225 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 TRANK1O15050 2925 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 CHEK1O14757 476 aa10.49□□□□□ -0.73
LIG1-221ENST00000613670 MGST3O14880 152 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms