RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 ATP6V0BQ99437 205 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 SPAG8Q99932 426 aaPredicted RBP4.72□□□□□ -1.65
CUX1-220ENST00000607092 NICN1Q9BSH3 213 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 WDR12Q9GZL7 423 aaKnown RBP4.72□□□□□ -1.65
CUX1-220ENST00000607092 SLIRPQ9GZT3 109 aaKnown RBP4.72□□□□□ -1.65
CUX1-220ENST00000607092 PARP12Q9H0J9 701 aaKnown RBP4.72□□□□□ -1.65
CUX1-220ENST00000607092 OR51E2Q9H255 320 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 NDUFB11Q9NX14 153 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 SDHAF2Q9NX18 166 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 CCDC59Q9P031 241 aaKnown RBP4.72□□□□□ -1.65
CUX1-220ENST00000607092 FBXL7Q9UJT9 491 aa4.72□□□□□ -1.65
CUX1-220ENST00000607092 PCLOQ9Y6V0 5065 aa4.71□□□□□ -1.65
CUX1-220ENST00000607092 A0A0J9YWU9 116 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 SOCS1O15524 211 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 TMEM127O75204 238 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 OR2J3O76001 311 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 OR2C1O95371 312 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 HRASP01112 189 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 UCHL1P09936 223 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 CALRP27797 417 aaKnown RBP4.71□□□□□ -1.66
CUX1-220ENST00000607092 S100A5P33763 92 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 RPL27AP46776 148 aaKnown RBP4.71□□□□□ -1.66
CUX1-220ENST00000607092 RORCP51449 518 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 NCS1P62166 190 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 ZNF45Q02386 682 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 ARFRP1Q13795 201 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 THOC7Q6I9Y2 204 aaKnown RBP4.71□□□□□ -1.66
CUX1-220ENST00000607092 KCTD9Q7L273 389 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 HSD17B13Q7Z5P4 300 aaPredicted RBP4.71□□□□□ -1.66
CUX1-220ENST00000607092 LRRTM1Q86UE6 522 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 TMEM61Q8N0U2 210 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 MFSD4AQ8N468 514 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 ZNF645Q8N7E2 425 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 UXS1Q8NBZ7 420 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 OR4S2Q8NH73 311 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 MCFD2Q8NI22 146 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 GATAD1Q8WUU5 269 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 ARHGAP5-AS1Q96IT6 56 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 FYTTD1Q96QD9 318 aaKnown RBP4.71□□□□□ -1.66
CUX1-220ENST00000607092 OR2A7Q96R45 310 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 HSD17B10Q99714 261 aaKnown RBP4.71□□□□□ -1.66
CUX1-220ENST00000607092 SRSF8Q9BRL6 282 aaKnown RBP4.71□□□□□ -1.66
CUX1-220ENST00000607092 PECRQ9BY49 303 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 C5orf66Q9H5L9 145 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 ZNF430Q9H8G1 570 aaPredicted RBP4.71□□□□□ -1.66
CUX1-220ENST00000607092 SLC2A9Q9NRM0 540 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 RAB22AQ9UL26 194 aa4.71□□□□□ -1.66
CUX1-220ENST00000607092 DNAH10Q8IVF4 4471 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 IGKV1-6A0A0C4DH72 117 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 LOC100506127A0A0U1RQW1 187 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 TMEM213A2RRL7 107 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 SRRM4A7MD48 611 aaKnown RBP4.7□□□□□ -1.66
CUX1-220ENST00000607092 FOXI3A8MTJ6 420 aaPredicted RBP4.7□□□□□ -1.66
CUX1-220ENST00000607092 PDCD5O14737 125 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 TSPAN4O14817 238 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 SCGNO76038 276 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 SCAF4O95104 1147 aaKnown RBP4.7□□□□□ -1.66
CUX1-220ENST00000607092 CD5P06127 495 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 CRYGCP07315 174 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 FCGR3AP08637 254 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 FGF2P09038 288 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 SAA1P0DJI8 122 aaPredicted RBP4.7□□□□□ -1.66
CUX1-220ENST00000607092 C8orf88P0DMB2 117 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 APELAP0DMC3 54 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 NAT1P18440 290 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 DTYMKP23919 212 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 ETV6P41212 452 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 PPP5CP53041 499 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 TMEM50BP56557 158 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 ARPC4P59998 168 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 LSM3P62310 102 aaKnown RBP4.7□□□□□ -1.66
CUX1-220ENST00000607092 KLK9Q2XQG4 91 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 PLET1Q6UQ28 207 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 CLEC19AQ6UXS0 136 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 C5orf24Q7Z6I8 188 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 TPRA1Q86W33 373 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 OR4A5Q8NH83 315 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 TMEM167AQ8TBQ9 72 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 PHLDA1Q8WV24 401 aaPredicted RBP4.7□□□□□ -1.66
CUX1-220ENST00000607092 FAM3DQ96BQ1 224 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 RNF183Q96D59 192 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 GALNT14Q96FL9 552 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 HDHD3Q9BSH5 251 aaPredicted RBP4.7□□□□□ -1.66
CUX1-220ENST00000607092 WFDC10AQ9H1F0 79 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 TXNL4BQ9NX01 149 aaKnown RBP4.7□□□□□ -1.66
CUX1-220ENST00000607092 KLK9Q9UKQ9 250 aa4.7□□□□□ -1.66
CUX1-220ENST00000607092 KMT2AQ03164 3969 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 A0A0A6YYD4 124 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 C11orf94C9JXX5 98 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 PPP5D1E7EU14 171 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 FCGR3BO75015 233 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 KBTBD11O94819 623 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 SCGB1D2O95969 90 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 PRH1P02810 166 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 CLEC3BP05452 202 aa4.69□□□□□ -1.66
CUX1-220ENST00000607092 HIST1H1DP16402 221 aaKnown RBP4.69□□□□□ -1.66
CUX1-220ENST00000607092 LORP23490 312 aaPredicted RBP4.69□□□□□ -1.66
CUX1-220ENST00000607092 PTBP1P26599 531 aaKnown RBP eCLIP4.69□□□□□ -1.664e-11■■■■■ 44.9
CUX1-220ENST00000607092 RPS19P39019 145 aaKnown RBP4.69□□□□□ -1.66
CUX1-220ENST00000607092 LINC00205P59089 165 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms