RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 OR2B8PP59922 312 aa11.35□□□□□ -0.59
UPF1-211ENST00000600868 RRAS2P62070 204 aaPredicted RBP11.35□□□□□ -0.59
UPF1-211ENST00000600868 FXYD3Q14802 87 aa11.35□□□□□ -0.59
UPF1-211ENST00000600868 TNXAQ16473 311 aa11.35□□□□□ -0.59
UPF1-211ENST00000600868 GSG1LQ6UXU4 331 aa11.35□□□□□ -0.59
UPF1-211ENST00000600868 Q6ZS46 218 aa11.35□□□□□ -0.59
UPF1-211ENST00000600868 Q8N2B8 174 aa11.35□□□□□ -0.59
UPF1-211ENST00000600868 OR5M8Q8NGP6 311 aa11.35□□□□□ -0.59
UPF1-211ENST00000600868 OR1L8Q8NGR8 309 aa11.35□□□□□ -0.59
UPF1-211ENST00000600868 OR5B3Q8NH48 314 aa11.35□□□□□ -0.59
UPF1-211ENST00000600868 OR52E5Q8NH55 327 aa11.35□□□□□ -0.59
UPF1-211ENST00000600868 OR10C1Q96KK4 312 aa11.35□□□□□ -0.59
UPF1-211ENST00000600868 COMMD5Q9GZQ3 224 aa11.35□□□□□ -0.59
UPF1-211ENST00000600868 ZNF702PQ9H963 129 aa11.35□□□□□ -0.59
UPF1-211ENST00000600868 OR51B2Q9Y5P1 312 aa11.35□□□□□ -0.59
UPF1-211ENST00000600868 CUBNO60494 3623 aa11.34□□□□□ -0.59
UPF1-211ENST00000600868 TEX50A0A1B0GTY4 177 aa11.34□□□□□ -0.59
UPF1-211ENST00000600868 C5orf51A6NDU8 294 aa11.34□□□□□ -0.59
UPF1-211ENST00000600868 CCSO14618 274 aa11.34□□□□□ -0.59
UPF1-211ENST00000600868 GOSR2O14653 212 aa11.34□□□□□ -0.59
UPF1-211ENST00000600868 ST8SIA3O43173 380 aa11.34□□□□□ -0.59
UPF1-211ENST00000600868 TSPAN9O75954 239 aa11.34□□□□□ -0.59
UPF1-211ENST00000600868 CNIH1O95406 144 aa11.34□□□□□ -0.59
UPF1-211ENST00000600868 HSPE1P61604 102 aaKnown RBP11.34□□□□□ -0.59
UPF1-211ENST00000600868 GNB1P62873 340 aa11.34□□□□□ -0.59
UPF1-211ENST00000600868 NDPQ00604 133 aa11.34□□□□□ -0.59
UPF1-211ENST00000600868 IAH1Q2TAA2 248 aaPredicted RBP11.34□□□□□ -0.59
UPF1-211ENST00000600868 PDLIM3Q53GG5 364 aaPredicted RBP11.34□□□□□ -0.59
UPF1-211ENST00000600868 C9orf152Q5JTZ5 239 aa11.34□□□□□ -0.59
UPF1-211ENST00000600868 SLC35E3Q7Z769 313 aa11.34□□□□□ -0.59
UPF1-211ENST00000600868 OR1S1Q8NH92 325 aa11.34□□□□□ -0.59
UPF1-211ENST00000600868 SRSF12Q8WXF0 261 aaKnown RBP11.34□□□□□ -0.59
UPF1-211ENST00000600868 ARPC1AQ92747 370 aa11.34□□□□□ -0.59
UPF1-211ENST00000600868 C2orf50Q96LR7 162 aa11.34□□□□□ -0.59
UPF1-211ENST00000600868 QTRT1Q9BXR0 403 aaKnown RBP11.34□□□□□ -0.59
UPF1-211ENST00000600868 MGAT4CQ9UBM8 478 aa11.34□□□□□ -0.59
UPF1-211ENST00000600868 PLXNB1O43157 2135 aa11.33□□□□□ -0.6
UPF1-211ENST00000600868 C13orf42A0A1B0GVH6 325 aa11.33□□□□□ -0.6
UPF1-211ENST00000600868 FAM25EA8MYX2 175 aa11.33□□□□□ -0.6
UPF1-211ENST00000600868 FAM90A26D6RGX4 464 aa11.33□□□□□ -0.6
UPF1-211ENST00000600868 RPL27AP46776 148 aaKnown RBP11.33□□□□□ -0.6
UPF1-211ENST00000600868 FCN2Q15485 313 aa11.33□□□□□ -0.6
UPF1-211ENST00000600868 C10orf55Q5SWW7 151 aa11.33□□□□□ -0.6
UPF1-211ENST00000600868 Q6ZSV7 163 aa11.33□□□□□ -0.6
UPF1-211ENST00000600868 ZBTB8BQ8NAP8 495 aaPredicted RBP11.33□□□□□ -0.6
UPF1-211ENST00000600868 NDUFA4L2Q9NRX3 87 aa11.33□□□□□ -0.6
UPF1-211ENST00000600868 ZNF580Q9UK33 172 aa11.33□□□□□ -0.6
UPF1-211ENST00000600868 NF1P21359 2839 aa11.33□□□□□ -0.6
UPF1-211ENST00000600868 LINC01548A6NM66 108 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 E7EUB6 86 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 AP4M1O00189 453 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 NDUFA7O95182 113 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 SIX6O95475 246 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 OPN1MWP04001 364 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 IGF1P05019 195 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 TRAPPC2P0DI81 140 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 TRAPPC2BP0DI82 140 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 OPN1MW2P0DN77 364 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 OPN1MW3P0DN78 364 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 EGR2P11161 476 aaPredicted RBP11.32□□□□□ -0.6
UPF1-211ENST00000600868 MYOD1P15172 320 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 CRIP2P52943 208 aaPredicted RBP11.32□□□□□ -0.6
UPF1-211ENST00000600868 SPCS3P61009 180 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 LURAP1LQ8IV03 231 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 OR11H7Q8NGC8 314 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 OR4D5Q8NGN0 318 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 SGMS2Q8NHU3 365 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 GRPEL2Q8TAA5 225 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 SRSF8Q9BRL6 282 aaKnown RBP11.32□□□□□ -0.6
UPF1-211ENST00000600868 PDCD10Q9BUL8 212 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 C16orf95Q9H693 158 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 PARP11Q9NR21 331 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 HSPB7Q9UBY9 170 aa11.32□□□□□ -0.6
UPF1-211ENST00000600868 TET2Q6N021 2002 aaPredicted RBP11.31□□□□□ -0.6
UPF1-211ENST00000600868 A0A1B0GW64 132 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 HMX3A6NHT5 357 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 MSGN1A6NI15 193 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 CGB1A6NKQ9 187 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 TEX22C9J3V5 150 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 ATP6V0E1O15342 81 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 IFNA17P01571 189 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 CXCL3P19876 107 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 H2BFSP57053 126 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 CYCSP99999 105 aaKnown RBP11.31□□□□□ -0.6
UPF1-211ENST00000600868 PRCDQ00LT1 54 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 ID3Q02535 119 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 TNFRSF9Q07011 255 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 SRSF4Q08170 494 aaKnown RBP11.31□□□□□ -0.6
UPF1-211ENST00000600868 IL15RAQ13261 267 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 OR2T6Q8NHC8 308 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 ABHD5Q8WTS1 349 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 TMEM68Q96MH6 324 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 FYTTD1Q96QD9 318 aaKnown RBP11.31□□□□□ -0.6
UPF1-211ENST00000600868 NMES1Q9C002 83 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 GSKIPQ9P0R6 139 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 FBXO7Q9Y3I1 522 aa11.31□□□□□ -0.6
UPF1-211ENST00000600868 A0A1W2PN81 502 aa11.3□□□□□ -0.6
UPF1-211ENST00000600868 INS-IGF2F8WCM5 200 aa11.3□□□□□ -0.6
UPF1-211ENST00000600868 MED6O75586 246 aa11.3□□□□□ -0.6
UPF1-211ENST00000600868 CHRNA7P36544 502 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms