RNA–Protein interactions for RNA: ENST00000593425.5

LIG1-205, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-205ENST00000593425 BET1LQ9NYM9 111 aa12.18□□□□□ -0.46
LIG1-205ENST00000593425 TRBV7-1A0A0A6YYK4 115 aa12.17□□□□□ -0.46
LIG1-205ENST00000593425 TRAV3A0A0B4J244 114 aa12.17□□□□□ -0.46
LIG1-205ENST00000593425 IGHV3-35A0A0C4DH35 117 aa12.17□□□□□ -0.46
LIG1-205ENST00000593425 NOTOA8MTQ0 251 aa12.17□□□□□ -0.46
LIG1-205ENST00000593425 PTHLHP12272 177 aa12.17□□□□□ -0.46
LIG1-205ENST00000593425 OR2B8PP59922 312 aa12.17□□□□□ -0.46
LIG1-205ENST00000593425 ANKRD55Q3KP44 614 aa12.17□□□□□ -0.46
LIG1-205ENST00000593425 ZNF585BQ52M93 769 aa12.17□□□□□ -0.46
LIG1-205ENST00000593425 OR1L6Q8NGR2 347 aa12.17□□□□□ -0.46
LIG1-205ENST00000593425 ZNF502Q8TBZ5 544 aa12.17□□□□□ -0.46
LIG1-205ENST00000593425 SECTM1Q8WVN6 248 aa12.17□□□□□ -0.46
LIG1-205ENST00000593425 CXorf58Q96LI9 332 aa12.17□□□□□ -0.46
LIG1-205ENST00000593425 TRAV25A0A0B4J276 109 aa12.16□□□□□ -0.46
LIG1-205ENST00000593425 IGLC7A0M8Q6 106 aa12.16□□□□□ -0.46
LIG1-205ENST00000593425 GALP22466 123 aa12.16□□□□□ -0.46
LIG1-205ENST00000593425 RBPMS2Q6ZRY4 209 aaKnown RBP12.16□□□□□ -0.46
LIG1-205ENST00000593425 LYG2Q86SG7 212 aa12.16□□□□□ -0.46
LIG1-205ENST00000593425 WFDC3Q8IUB2 231 aa12.16□□□□□ -0.46
LIG1-205ENST00000593425 SPAG16Q8N0X2 631 aa12.16□□□□□ -0.46
LIG1-205ENST00000593425 OR13F1Q8NGS4 319 aa12.16□□□□□ -0.46
LIG1-205ENST00000593425 OR4A5Q8NH83 315 aa12.16□□□□□ -0.46
LIG1-205ENST00000593425 LGALS14Q8TCE9 139 aa12.16□□□□□ -0.46
LIG1-205ENST00000593425 MARC2Q969Z3 335 aa12.16□□□□□ -0.46
LIG1-205ENST00000593425 CNBD2Q96M20 576 aa12.16□□□□□ -0.46
LIG1-205ENST00000593425 HRASLSQ9HDD0 168 aa12.16□□□□□ -0.46
LIG1-205ENST00000593425 MRPL27Q9P0M9 148 aaKnown RBP12.16□□□□□ -0.46
LIG1-205ENST00000593425 UBQLN2Q9UHD9 624 aa12.16□□□□□ -0.46
LIG1-205ENST00000593425 NUPR2A6NF83 97 aa12.15□□□□□ -0.46
LIG1-205ENST00000593425 DEFB135Q30KP9 77 aa12.15□□□□□ -0.46
LIG1-205ENST00000593425 ZNF773Q6PK81 442 aa12.15□□□□□ -0.46
LIG1-205ENST00000593425 OR2C3Q8N628 320 aa12.15□□□□□ -0.46
LIG1-205ENST00000593425 GVQW1Q8N7I0 195 aa12.15□□□□□ -0.46
LIG1-205ENST00000593425 ZNF436Q9C0F3 470 aaPredicted RBP12.15□□□□□ -0.46
LIG1-205ENST00000593425 TXNL4BQ9NX01 149 aaKnown RBP12.15□□□□□ -0.46
LIG1-205ENST00000593425 DAPK2Q9UIK4 370 aa12.15□□□□□ -0.46
LIG1-205ENST00000593425 BLOC1S6Q9UL45 172 aa12.15□□□□□ -0.46
LIG1-205ENST00000593425 SULT1C2O00338 296 aa12.14□□□□□ -0.47
LIG1-205ENST00000593425 UPK2O00526 184 aa12.14□□□□□ -0.47
LIG1-205ENST00000593425 SCGNO76038 276 aa12.14□□□□□ -0.47
LIG1-205ENST00000593425 FCGR2CP31995 323 aa12.14□□□□□ -0.47
LIG1-205ENST00000593425 ELLP55199 621 aaPredicted RBP12.14□□□□□ -0.47
LIG1-205ENST00000593425 TNFRSF9Q07011 255 aa12.14□□□□□ -0.47
LIG1-205ENST00000593425 PLET1Q6UQ28 207 aa12.14□□□□□ -0.47
LIG1-205ENST00000593425 BEST4Q8NFU0 473 aa12.14□□□□□ -0.47
LIG1-205ENST00000593425 TMEM190Q8WZ59 177 aa12.14□□□□□ -0.47
LIG1-205ENST00000593425 TP53TG1Q9Y2A0 90 aa12.14□□□□□ -0.47
LIG1-205ENST00000593425 RRP15Q9Y3B9 282 aaKnown RBP12.14□□□□□ -0.47
LIG1-205ENST00000593425 UFC1Q9Y3C8 167 aa12.14□□□□□ -0.47
LIG1-205ENST00000593425 FRAS1Q86XX4 4008 aa12.14□□□□□ -0.47
LIG1-205ENST00000593425 RBFOX2O43251 390 aaKnown RBP eCLIP12.13□□□□□ -0.474e-6■□□□□ 9.1
LIG1-205ENST00000593425 TGOLN2O43493 480 aa12.13□□□□□ -0.47
LIG1-205ENST00000593425 SPRY2O43597 315 aa12.13□□□□□ -0.47
LIG1-205ENST00000593425 PPYP01298 95 aa12.13□□□□□ -0.47
LIG1-205ENST00000593425 PTBP1P26599 531 aaKnown RBP eCLIP12.13□□□□□ -0.47
LIG1-205ENST00000593425 FGF9P31371 208 aaPredicted RBP12.13□□□□□ -0.47
LIG1-205ENST00000593425 APOC4P55056 127 aa12.13□□□□□ -0.47
LIG1-205ENST00000593425 TAS2R31P59538 309 aa12.13□□□□□ -0.47
LIG1-205ENST00000593425 ARPC4P59998 168 aa12.13□□□□□ -0.47
LIG1-205ENST00000593425 MSMO1Q15800 293 aa12.13□□□□□ -0.47
LIG1-205ENST00000593425 POU2AF1Q16633 256 aa12.13□□□□□ -0.47
LIG1-205ENST00000593425 SFXN4Q6P4A7 337 aa12.13□□□□□ -0.47
LIG1-205ENST00000593425 CEMP1Q6PRD7 247 aaPredicted RBP12.13□□□□□ -0.47
LIG1-205ENST00000593425 IZUMO2Q6UXV1 221 aa12.13□□□□□ -0.47
LIG1-205ENST00000593425 Q6ZWC4 215 aa12.13□□□□□ -0.47
LIG1-205ENST00000593425 OR10W1Q8NGF6 305 aa12.13□□□□□ -0.47
LIG1-205ENST00000593425 SPAG8Q99932 426 aaPredicted RBP12.13□□□□□ -0.47
LIG1-205ENST00000593425 KRTAP17-1Q9BYP8 105 aa12.13□□□□□ -0.47
LIG1-205ENST00000593425 C5orf66Q9H5L9 145 aa12.13□□□□□ -0.47
LIG1-205ENST00000593425 RHBDL2Q9NX52 303 aa12.13□□□□□ -0.47
LIG1-205ENST00000593425 S1PR2O95136 353 aa12.12□□□□□ -0.47
LIG1-205ENST00000593425 HPRT1P00492 218 aa12.12□□□□□ -0.47
LIG1-205ENST00000593425 FCER2P06734 321 aa12.12□□□□□ -0.47
LIG1-205ENST00000593425 RPA2P15927 270 aa12.12□□□□□ -0.47
LIG1-205ENST00000593425 BMI1P35226 326 aa12.12□□□□□ -0.47
LIG1-205ENST00000593425 ODF3L2Q3SX64 289 aa12.12□□□□□ -0.47
LIG1-205ENST00000593425 UBE2UQ5VVX9 321 aa12.12□□□□□ -0.47
LIG1-205ENST00000593425 SLC38A6Q8IZM9 456 aa12.12□□□□□ -0.47
LIG1-205ENST00000593425 ZBTB34Q8NCN2 500 aa12.12□□□□□ -0.47
LIG1-205ENST00000593425 OR5H6Q8NGV6 325 aa12.12□□□□□ -0.47
LIG1-205ENST00000593425 SLC25A38Q96DW6 304 aa12.12□□□□□ -0.47
LIG1-205ENST00000593425 AIFM2Q9BRQ8 373 aa12.12□□□□□ -0.47
LIG1-205ENST00000593425 COMMD5Q9GZQ3 224 aa12.12□□□□□ -0.47
LIG1-205ENST00000593425 SLC5A7Q9GZV3 580 aa12.12□□□□□ -0.47
LIG1-205ENST00000593425 TMEM140Q9NV12 185 aa12.12□□□□□ -0.47
LIG1-205ENST00000593425 TRAV18A0A075B6X5 111 aa12.11□□□□□ -0.47
LIG1-205ENST00000593425 OR2T8A6NH00 312 aa12.11□□□□□ -0.47
LIG1-205ENST00000593425 TSPAN4O14817 238 aa12.11□□□□□ -0.47
LIG1-205ENST00000593425 NQO2P16083 231 aa12.11□□□□□ -0.47
LIG1-205ENST00000593425 FXYD4P59646 89 aa12.11□□□□□ -0.47
LIG1-205ENST00000593425 CATR1Q13166 79 aa12.11□□□□□ -0.47
LIG1-205ENST00000593425 ZNF818PQ6ZRF7 136 aa12.11□□□□□ -0.47
LIG1-205ENST00000593425 TPRA1Q86W33 373 aa12.11□□□□□ -0.47
LIG1-205ENST00000593425 HOGA1Q86XE5 327 aa12.11□□□□□ -0.47
LIG1-205ENST00000593425 GDPD1Q8N9F7 314 aa12.11□□□□□ -0.47
LIG1-205ENST00000593425 SRSF8Q9BRL6 282 aaKnown RBP12.11□□□□□ -0.47
LIG1-205ENST00000593425 THYN1Q9P016 225 aa12.11□□□□□ -0.47
LIG1-205ENST00000593425 KMT2AQ03164 3969 aa12.11□□□□□ -0.47
LIG1-205ENST00000593425 IGHV3OR16-8A0A075B7F1 116 aa12.1□□□□□ -0.47
LIG1-205ENST00000593425 IGHV3-21A0A0B4J1V1 117 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms