RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 S4R3C0 116 aa8.86□□□□□ -0.99
LIG3-209ENST00000586435 IGLC7A0M8Q6 106 aa8.85□□□□□ -0.99
LIG3-209ENST00000586435 NUPR2A6NF83 97 aa8.85□□□□□ -0.99
LIG3-209ENST00000586435 MFSD2BA6NFX1 497 aa8.85□□□□□ -0.99
LIG3-209ENST00000586435 SSX5O60225 188 aa8.85□□□□□ -0.99
LIG3-209ENST00000586435 SCAF4O95104 1147 aaKnown RBP8.85□□□□□ -0.99
LIG3-209ENST00000586435 CLEC3BP05452 202 aa8.85□□□□□ -0.99
LIG3-209ENST00000586435 DEFA4P12838 97 aa8.85□□□□□ -0.99
LIG3-209ENST00000586435 ATF4P18848 351 aaPredicted RBP8.85□□□□□ -0.99
LIG3-209ENST00000586435 HSPA13P48723 471 aa8.85□□□□□ -0.99
LIG3-209ENST00000586435 OR2B8PP59922 312 aa8.85□□□□□ -0.99
LIG3-209ENST00000586435 TNFRSF9Q07011 255 aa8.85□□□□□ -0.99
LIG3-209ENST00000586435 TM4SF20Q53R12 229 aa8.85□□□□□ -0.99
LIG3-209ENST00000586435 UNQ9165/PRO28630Q6UXU0 137 aa8.85□□□□□ -0.99
LIG3-209ENST00000586435 Q6ZWC4 215 aa8.85□□□□□ -0.99
LIG3-209ENST00000586435 SSX9Q7RTT3 188 aa8.85□□□□□ -0.99
LIG3-209ENST00000586435 TPRA1Q86W33 373 aa8.85□□□□□ -0.99
LIG3-209ENST00000586435 OR1L6Q8NGR2 347 aa8.85□□□□□ -0.99
LIG3-209ENST00000586435 ZNF502Q8TBZ5 544 aa8.85□□□□□ -0.99
LIG3-209ENST00000586435 ZNF436Q9C0F3 470 aaPredicted RBP8.85□□□□□ -0.99
LIG3-209ENST00000586435 SMIM30A4D0T7 59 aa8.84□□□□□ -0.99
LIG3-209ENST00000586435 MRPS14O60783 128 aaKnown RBP8.84□□□□□ -0.99
LIG3-209ENST00000586435 REG1AP05451 166 aa8.84□□□□□ -0.99
LIG3-209ENST00000586435 MYOD1P15172 320 aa8.84□□□□□ -0.99
LIG3-209ENST00000586435 PTBP1P26599 531 aaKnown RBP eCLIP8.84□□□□□ -0.99
LIG3-209ENST00000586435 GPR183P32249 361 aa8.84□□□□□ -0.99
LIG3-209ENST00000586435 APOC4P55056 127 aa8.84□□□□□ -0.99
LIG3-209ENST00000586435 SCAND1P57086 179 aa8.84□□□□□ -0.99
LIG3-209ENST00000586435 TAS2R31P59538 309 aa8.84□□□□□ -0.99
LIG3-209ENST00000586435 GABARAPL2P60520 117 aa8.84□□□□□ -0.99
LIG3-209ENST00000586435 THOC7Q6I9Y2 204 aaKnown RBP8.84□□□□□ -0.99
LIG3-209ENST00000586435 RBPMS2Q6ZRY4 209 aaKnown RBP8.84□□□□□ -0.99
LIG3-209ENST00000586435 SPAG16Q8N0X2 631 aa8.84□□□□□ -0.99
LIG3-209ENST00000586435 OR13F1Q8NGS4 319 aa8.84□□□□□ -0.99
LIG3-209ENST00000586435 TMEM190Q8WZ59 177 aa8.84□□□□□ -0.99
LIG3-209ENST00000586435 SPAG8Q99932 426 aaPredicted RBP8.84□□□□□ -0.99
LIG3-209ENST00000586435 VCX3BQ9H321 246 aa8.84□□□□□ -0.99
LIG3-209ENST00000586435 C5orf66Q9H5L9 145 aa8.84□□□□□ -0.99
LIG3-209ENST00000586435 CCL28Q9NRJ3 127 aa8.84□□□□□ -0.99
LIG3-209ENST00000586435 TXNL4BQ9NX01 149 aaKnown RBP8.84□□□□□ -0.99
LIG3-209ENST00000586435 THYN1Q9P016 225 aa8.84□□□□□ -0.99
LIG3-209ENST00000586435 UFC1Q9Y3C8 167 aa8.84□□□□□ -0.99
LIG3-209ENST00000586435 SELENOKQ9Y6D0 94 aa8.84□□□□□ -0.99
LIG3-209ENST00000586435 UBE2CO00762 179 aa8.83□□□□□ -1
LIG3-209ENST00000586435 TSPAN4O14817 238 aa8.83□□□□□ -1
LIG3-209ENST00000586435 HPRT1P00492 218 aa8.83□□□□□ -1
LIG3-209ENST00000586435 PPYP01298 95 aa8.83□□□□□ -1
LIG3-209ENST00000586435 NQO2P16083 231 aa8.83□□□□□ -1
LIG3-209ENST00000586435 BMI1P35226 326 aa8.83□□□□□ -1
LIG3-209ENST00000586435 ARPC4P59998 168 aa8.83□□□□□ -1
LIG3-209ENST00000586435 CATR1Q13166 79 aa8.83□□□□□ -1
LIG3-209ENST00000586435 ZNF585BQ52M93 769 aa8.83□□□□□ -1
LIG3-209ENST00000586435 UBE2UQ5VVX9 321 aa8.83□□□□□ -1
LIG3-209ENST00000586435 SFXN4Q6P4A7 337 aa8.83□□□□□ -1
LIG3-209ENST00000586435 PLET1Q6UQ28 207 aa8.83□□□□□ -1
LIG3-209ENST00000586435 SLC38A6Q8IZM9 456 aa8.83□□□□□ -1
LIG3-209ENST00000586435 OR2C3Q8N628 320 aa8.83□□□□□ -1
LIG3-209ENST00000586435 BEST4Q8NFU0 473 aa8.83□□□□□ -1
LIG3-209ENST00000586435 LGALS14Q8TCE9 139 aa8.83□□□□□ -1
LIG3-209ENST00000586435 VN1R17PQ8TDU5 208 aa8.83□□□□□ -1
LIG3-209ENST00000586435 SECTM1Q8WVN6 248 aa8.83□□□□□ -1
LIG3-209ENST00000586435 CNBD2Q96M20 576 aa8.83□□□□□ -1
LIG3-209ENST00000586435 GPHA2Q96T91 129 aa8.83□□□□□ -1
LIG3-209ENST00000586435 ATP6V0BQ99437 205 aa8.83□□□□□ -1
LIG3-209ENST00000586435 COMMD5Q9GZQ3 224 aa8.83□□□□□ -1
LIG3-209ENST00000586435 HRASLSQ9HDD0 168 aa8.83□□□□□ -1
LIG3-209ENST00000586435 RHBDL2Q9NX52 303 aa8.83□□□□□ -1
LIG3-209ENST00000586435 DAPK2Q9UIK4 370 aa8.83□□□□□ -1
LIG3-209ENST00000586435 KIR2DL5BA0A0G2JN68 375 aa8.82□□□□□ -1
LIG3-209ENST00000586435 KIR2DL5BA0A0G2JPC4 375 aa8.82□□□□□ -1
LIG3-209ENST00000586435 A0A0J9YWU9 116 aa8.82□□□□□ -1
LIG3-209ENST00000586435 CXorf65A6NEN9 183 aa8.82□□□□□ -1
LIG3-209ENST00000586435 ANKRD65E5RJM6 399 aa8.82□□□□□ -1
LIG3-209ENST00000586435 UPK2O00526 184 aa8.82□□□□□ -1
LIG3-209ENST00000586435 CYB5BO43169 146 aa8.82□□□□□ -1
LIG3-209ENST00000586435 TGOLN2O43493 480 aa8.82□□□□□ -1
LIG3-209ENST00000586435 TNFSF12O43508 249 aa8.82□□□□□ -1
LIG3-209ENST00000586435 SPRY2O43597 315 aa8.82□□□□□ -1
LIG3-209ENST00000586435 LY6G6CO95867 125 aa8.82□□□□□ -1
LIG3-209ENST00000586435 FCGR2CP31995 323 aa8.82□□□□□ -1
LIG3-209ENST00000586435 IZUMO2Q6UXV1 221 aa8.82□□□□□ -1
LIG3-209ENST00000586435 HSD17B13Q7Z5P4 300 aaPredicted RBP8.82□□□□□ -1
LIG3-209ENST00000586435 LYG2Q86SG7 212 aa8.82□□□□□ -1
LIG3-209ENST00000586435 HOGA1Q86XE5 327 aa8.82□□□□□ -1
LIG3-209ENST00000586435 KIR2DL5AQ8N109 375 aa8.82□□□□□ -1
LIG3-209ENST00000586435 GDPD1Q8N9F7 314 aa8.82□□□□□ -1
LIG3-209ENST00000586435 KIR2DL5BQ8NHK3 375 aa8.82□□□□□ -1
LIG3-209ENST00000586435 CD300LFQ8TDQ1 290 aa8.82□□□□□ -1
LIG3-209ENST00000586435 PLEKHA2Q9HB19 425 aa8.82□□□□□ -1
LIG3-209ENST00000586435 DAZ1Q9NQZ3 744 aaKnown RBP8.82□□□□□ -1
LIG3-209ENST00000586435 COMMD9Q9P000 198 aa8.82□□□□□ -1
LIG3-209ENST00000586435 ETV7Q9Y603 341 aa8.82□□□□□ -1
LIG3-209ENST00000586435 A0A0A6YYH2 397 aa8.81□□□□□ -1
LIG3-209ENST00000586435 TRAV3A0A0B4J244 114 aa8.81□□□□□ -1
LIG3-209ENST00000586435 A6NJ64 397 aa8.81□□□□□ -1
LIG3-209ENST00000586435 EWSR1Q01844 656 aaKnown RBP eCLIP8.81□□□□□ -1
LIG3-209ENST00000586435 PMS2P11Q13670 270 aa8.81□□□□□ -1
LIG3-209ENST00000586435 ODF3L2Q3SX64 289 aa8.81□□□□□ -1
LIG3-209ENST00000586435 SPSB3Q6PJ21 355 aa8.81□□□□□ -1
LIG3-209ENST00000586435 ZNF773Q6PK81 442 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms